Panicum virgatum (switchgrass): 120697724
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Entry
120697724 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120697724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120697724
03036 Chromosome and associated proteins [BR:
pvir03036
]
120697724
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120697724
Coactivators
SAGA/TFTC/STAGA complex
120697724
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120697724
STAGA complex
120697724
TFTC complex
120697724
SAGA complex
120697724
SLIK complex
120697724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
RecX_HTH3
PALB2_WD40
WD40_like
SpoVT_C
Cytochrom_D1
VPS8_N
Motif
Other DBs
NCBI-GeneID:
120697724
NCBI-ProteinID:
XP_039836965
LinkDB
All DBs
Position
3K:complement(14208038..14219468)
Genome browser
AA seq
658 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRLSTSAVSDVTLARSDNDPGRYHDGYSRL
RTWAYSSLDQYKHELLRVLYPVFIHCFMDLVTEGHMQEARSFFHKFREDHEVMHSRDLQK
LEAVLSSSHLEEMELARSLRQNKFKIKLCEYSYELLLQYLQKTQALVVLGVINEHITFEA
VSPGQPSLISDDADVVALIGTSKDLAKQINQKEVHWGELEDSVEERMEKALAESDKVEAE
SKDAGTEDNKKRNAEGGKQGASLKKSKKDKLVGATGKNIRTETSMVSVAPRVKPELTLPT
TPVEVEQSILEDLRNRAQLNSVALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSV
KVWDMSKIGQPAKTSSSQGDNGSSQGERMSTIDEGKRPYTLFQGHSGPVYSAAFSPFGDF
LLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKI
QPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECIRMFIGHRSMVLSLAM
SPDGRYMASGDEDGTIMIWDLSTGRCVSPLLGHSSCVWTLAFSCEGALLASGSADCTVKL
WDVASSTKALKTEDTKGGTANRLRLLKALPTKSTPVYSLRFSRRNLLFASGALSLNTL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaagtgcagcagtacctgcagcgcaaggggttccgc
ctcaccgagcttgcgctgcaggaggagcgcaaccgcctctccacctccgccgtctccgac
gtcacgcttgccagatctgacaatgatccgggaagataccatgatggatatagtagacta
agaacatgggcatatagttctcttgatcaatacaagcatgaattactccgtgtcctttac
ccagtttttatccattgcttcatggatctagtgacagagggacatatgcaggaagctcgg
tcatttttccataagtttcgggaagatcatgaagtaatgcattcaagggatcttcagaag
ctggaagctgtcctctcctcttcacatctggaggaaatggaactggcccgatctttaagg
caaaataaatttaaaattaaattatgcgagtattcatacgaattgcttctccagtatctc
cagaaaacacaagctcttgttgtgcttggggtaatcaatgagcacataacttttgaagca
gtatctcctgggcaaccctcattaatttctgatgatgcggacgttgttgccctgattgga
acaagtaaggacttggcaaagcagataaatcagaaggaagtgcattggggggagcttgaa
gattctgttgaagagcgaatggagaaggcactagcagaatctgataaagttgaagctgaa
agcaaggatgccggcacagaagataacaagaaaagaaacgcagaaggtggaaagcaaggt
gcttctcttaagaagagcaaaaaggataagcttgtaggcgcaactggaaaaaacatcaga
actgaaacaagcatggtttctgtggcacctcgtgtgaaaccagagctaactctgccaaca
acgcctgtcgaagttgaacaatcgattcttgaggatctgcgaaaccgtgcacaactgaat
agtgtggcattaccgtctgttagcttctacacattcctcaatacacataatggattaaac
tgttcatcgatatcacatgatgggtctttggttgtgggtgggttttctgattcgtcagtg
aaggtttgggatatgtcaaagattggtcaaccagcaaaaacatctagttcacagggggat
aatggatcttcccagggtgaacgcatgtcaaccatagatgaggggaaaagaccttataca
ctattccaaggtcattctggaccagtttattcagcggcctttagcccgtttggggatttt
ctcttgtcatcatcttcagattcaacaattagactttggagtaccaagctgaatgccaat
cttgtctgttacaaaggacacaactacccagtttgggatgtccaattcagcccggtcggt
cattactttgctagtgcttcacatgacaggactgctagaatctggtcaatggataaaatt
cagcctttgcggataatggctgggcatctttctgatgttgattgtgtccagtggcatgta
aactgtaactacattgccactggttctagcgacaagactgtaagactatgggatgttcag
tcaggcgagtgtatacggatgtttattggtcataggagtatggttttatcactggcaatg
tcacccgatggacgatacatggcctctggagacgaagatggaaccatcatgatatgggat
ctatctactggtcgctgtgtttcaccactactaggacacagctcttgtgtgtggacactt
gctttcagctgtgaaggggcactgcttgcatctggatcagccgactgtactgtaaaacta
tgggatgtcgcttccagcacaaaggccctgaagacagaggacaccaaaggcggtacagct
aaccgactgaggttgcttaaagctctccccacaaaatcaactcctgtttatagcctgcgg
ttctctcggcggaaccttctatttgcgtccggtgctctctcgctgaacacgttgtaa
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integrated database retrieval system
