KEGG   Panicum virgatum (switchgrass): 120697839
Entry
120697839         CDS       T07260                                 
Name
(RefSeq) splicing factor U2af small subunit B-like isoform X1
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120697839
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120697839
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120697839
 Complex B
    120697839
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4 HATPase_c
Other DBs
NCBI-GeneID: 120697839
NCBI-ProteinID: XP_039837129
LinkDB
Position
3K:complement(15592712..15595362)
AA seq 304 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLVLANMYQRPDMITP
GVDAQGQPIDPEKMQEHFEDFYEDIHEELGKFGEIENLNVCDNLADHMIGNVYVQFREEE
QAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGRDL
RRKLYGHSASRRYHGRSRSRSPPPQRRGHRDRDDYHRDRDDYRRGGGGGGGGGRGRGSRH
DRYDDGGGRGGRHDRYDDGGRRRRGSPPPRGSPPPRRGRSPVRESSEERRAKIEQWNRER
EAKQ
NT seq 915 nt   +upstreamnt  +downstreamnt
atggcggagcacttggcttcgatctttggcactgagaaggatagggtcaactgccctttc
tacttcaagattggggcttgtcgtcatggggatcgctgttcccgtctgcacaacaggcca
accatatcaccgactcttgttcttgctaacatgtatcagcgtcctgatatgataacccct
ggagttgatgctcaaggccaacctattgatcctgagaagatgcaggagcattttgaggac
ttctatgaggacatccatgaggagttgggcaagttcggtgagatcgagaacctgaatgtc
tgcgacaaccttgctgaccacatgatagggaatgtctatgtccagttcagggaggaagaa
caagcagctgcagcatacaatgctcttcagggtcgcttttactctggccgcccaataatt
gtggagtattctcctgtgactgacttccgtgaagcaacctgtaggcagtttgaggagaac
agctgcaaccgtggtggctactgtaacttcatgcatgtgaaacaaattggcagggatctc
aggaggaagctctatgggcattctgcttccaggaggtaccatgggagaagcagaagcaga
agccccccacctcaaaggaggggtcatcgtgatcgtgatgactaccatcgtgaccgtgat
gattaccgtcgtggtggcggcggcggcggcggtggcgggcggggtagaggcagcagacat
gacaggtatgatgatggagggggcagaggcggcaggcacgacaggtatgatgatggagga
agacgcaggcgtggtagcccacccccacgtggtagcccacccccaaggcgtgggaggagc
ccagtcagggagagcagcgaggaacgcagggcgaagattgagcagtggaaccgtgaacgg
gaggcaaagcagtga

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