Panicum virgatum (switchgrass): 120697848
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Entry
120697848 CDS
T07260
Name
(RefSeq) homeobox-DDT domain protein RLT2-like isoform X1
Organism
pvir
Panicum virgatum (switchgrass)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WSD
HARE-HTH
DDT
Homeodomain
WHIM1
Homeobox_KN
zf-Vps39_C
Phage_zn_bind_3
Motif
Other DBs
NCBI-GeneID:
120697848
NCBI-ProteinID:
XP_039837143
LinkDB
All DBs
Position
3K:15710393..15726551
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AA seq
1849 aa
AA seq
DB search
MESSGDGGDEGAAAPSAAGMGSPGPASAPAAAGAGSSGAGASGSGGKPPVKRVMKTPYQL
EVLERTYTEDSYPNETKRAELSVQLGLTDRQLQMWFCHRRLKDRKPPAKRQQRDEEVTVP
VIAPPPVLPPPLPPSEIMVGTVGAYGEPMLPYSRRGPGRSSAVPRISVPEIGSRYYEPPP
VILPHMAAVHLTQAEHRVIDSVEASIGEPLREDGPVLGIEFDPLPPGAFGAPIAVPEQPK
QPYRSYESKMFSGHDPKPMKASAFLPTIDPLLPNTVTGKRKSLVGSSSHLGSQAVHEYQF
LPEQPSDMYERASHSRYYDAPTEVSNSRIASLSTGSRFLHGAEQAPSYSYHGQLSASSHL
AQHGRSPILSGSADHEGALSNINVSPAPIHGQFGIPQVAGFENSHASSERMGYHDEDSYR
VDRKRKHNEEAKIAREVEAHEKRIRKELEKQDLLNRKREEQMRRETERHDRERRKEEERL
MRERQREEDRFQKEQRREHKRMEKFMQKQSIRAEKLRQKEELRREKEAARQKAANERATA
RRIAREYMELMEDERLELLELACRSKGLPSMLSLDSDTLQQLDSFREMLGQFPPETVRLK
VPFSIKPWAASEDNIGNLLMVWRFFITFADVLGLPSFTLDEFLQALHDYDSRFLGELHVA
LLKSIIKDIEDVARTPSVALGVNQSSSANPGGGHPQIVEGAYAWGFNILNWQRHLNFLTW
PEILRQFGLCAGFGPQLKKRNAETVYYREDNEGRDGADVISTLRNGSAAVNAAALMKERG
YTNRRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILEVAEKIQKSGLRDLTTSKTPEASIS
AALSRDTKLFERTAPSTYCVKTPYRKDPADSEAVLSAAREKIRVFQNALSECEEVEKDVD
EAERDEDSECDDADDDADGDDMNIDDKDAKSPLVRAQDGAPVTVVGFIKKQSNSVVNTLA
PQIPQTKSSEIVSLHSFDSKASTSTDPAVGDDAKYTEIDESNQGESWVQGLAEGDYCDLS
VDERLNALVVLIGVATEGNSIRAILEERLEAASALKKQMWAEAQLDKRRTREDFTSKTQY
DSCVGLKVDTDRENNAAETLTPVHNPIKNNDGNASTTNNDLLVDKQNQLITGDIAHQQNG
VSRESSINPESLSVQQYASSEKTRSQLKSYIGHKAEQLYVYRSLPLGQDRRRNRYWQFSA
SSSSYDPGSGRIFFESRDGYWRVIDSAEAFEALVASLNTRGIRESHLHSMLQSIEPTFKE
AVERKKCSTLEQPAGRILKNGSNEIISPNRVNEFGSPCSTLSGVASDNLLAHSDTFKIEL
GRNEAEKIAISKRAYVFVKWMWRECYSHQSTYAMKYGKKRYPELIQSCDHCYQIYLTEER
HCSSCHKTFKPIHNFLEHSSQCEEKKRADPNWKMQIVDHSVPIGLRLLKLLLATIEASVP
AEALQPFWTDGYRKSWGAKLYSASSAEEVLQMLTMLEGAIKRDYLSSNFETTTELLNSNT
QDTNQNSVARSGSVTVLPWVPDTTAAVALRLLDLDSSISYTFHPKAASNKDREAGNFTNL
PPRYPAIRNKQEIEHFGVIGFDQQDGMLLANSNGRRGRGRGSRGGSRGGRSRSRGGKVPR
GISSSSRIQFRNDNNISYEKGPRKIAKNTRGRGRGRGRGRGRGRGRGRGLRTVRPRQPSE
LGTRSIPKANLLGSFSMLSKANHSGTVHSPESSGAEEWALERREYVEDDDNNSLSQSDES
EENEENGEPMNEEYDDEQQVPGYRRDNSKSSPLQMMDDGSEDNDDDAEGDEEGDDGEDYE
AEDAGGDDDDDIDMGGDGDDDDDDDDGGDGVANADVDEGGTSYSSEYSE
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggagtcctccggcgatgggggcgacgagggcgccgcggcgccgtcggcggcggggatg
gggagccccggcccggcgtcggcccccgcggccgctggcgccgggagtagcggagccggt
gcgtctggatccggggggaagccaccggtgaagcgcgtcatgaagacgccctaccagttg
gaggtcctcgagaggacgtatacagaggactcgtacccaaacgagacgaagcgggcggag
ctgtcggtgcagttggggctcacagacaggcagctgcagatgtggttctgccatcgccgg
ctcaaggaccggaaacctccggccaaaaggcagcagcgggatgaggaggtcaccgtgcca
gtcatagctccaccgcccgtcctcccgcccccattgccacccagcgagataatggtgggg
actgttggggcttatggtgagccgatgctgccttactccaggagagggcctggccggtca
tcggctgtgcctaggatatctgtgccggagattgggagcagatactatgagccaccacca
gtcattctgcctcacatggcagccgtgcaccttacacaagctgagcaccgggtgatcgat
tctgtggaagcatcgataggggaaccgctgagggaggatgggccagtgcttggtattgag
tttgatccacttcctcctggtgcatttggcgcgcctattgcagttccagagcaaccgaag
cagccctaccgatcttatgaaagcaagatgttttctgggcatgatcctaagcccatgaag
gcatcagcatttttgcctaccatagaccctttgcttccaaatacagttacggggaaacgg
aagtccttggttgggtcgtcttctcatcttggttcacaggcagtacatgaataccagttt
cttcctgagcagccaagtgatatgtatgagagggcaagccattcacgctactatgatgct
ccaacagaggtgtcaaattcgaggatagcttctctgtctacgggatcacgtttcctccat
ggagctgagcaggcacccagctattcgtatcacggtcaattatctgcttcaagccattta
gctcaacatggcagatcacccattctatccggatcagcagatcatgagggggctctgtca
aatattaatgttagcccagctccaatccatggccaatttggcattcctcaagttgctggg
ttcgagaactcccatgcatcctctgaaagaatgggttatcatgatgaagatagctatcgt
gtggacaggaagcgcaagcataacgaggaagctaagattgcgagggaagttgaggcacat
gaaaaacgaatcagaaaggagcttgagaagcaagatctgctgaacagaaagagagaagaa
caaatgcggagggaaacagagagacatgatcgtgaaagacgtaaagaagaggagaggttg
atgcgtgaaaggcaaagggaagaagatagattccaaaaggaacaaaggcgtgaacacaag
cgcatggagaagtttatgcagaaacaatccataagagctgagaaactaagacaaaaagag
gagcttcgaagggaaaaggaggctgcaaggcagaaggctgctaatgagagggctactgca
cgcagaatcgcgcgagagtatatggaactgatggaagatgagcgcttagaactattagaa
ctggcctgtcgtagtaaaggattgccctcgatgctttctcttgatagtgacacattacag
caacttgattcatttagagaaatgctgggacaatttcctcctgaaactgtgagactgaag
gtgccattttcaataaaaccatgggcagcttcggaggataacattgggaaccttttgatg
gtttggaggttctttatcaccttcgctgatgttcttgggcttccatcgttcacattggat
gagttcctgcaggctcttcatgattatgattcaaggttcctgggggagttgcatgttgct
ctgctgaaatctattataaaagatattgaggatgttgcacggactccttcagttgctttg
ggtgtgaatcagagcagttctgctaatcctggaggtggtcacccacaaatcgttgaaggg
gcatatgcttggggctttaacatacttaactggcagcgccacttgaactttcttacatgg
cctgaaatattgcgccaatttggtttatgtgctggttttgggcctcagttaaagaaaagg
aatgctgaaactgtatattaccgtgaagataatgagggacgtgatggtgcggatgtcatt
tccactctgcgaaatggttcggcggctgtgaatgctgctgctttgatgaaggagagaggg
tatactaaccgtcgccggtcacgacaccgtctgacacctggaaccgtaaaatttgctgct
ttccatgtattatcacttgaagggagcaaaggtctcacaatactggaagttgcagaaaag
atccagaaatctggactgagagaccttacaacaagcaagacaccagaggcttctatatct
gcagcattgtcaagagacactaagctttttgaaagaacggcaccttcaacatattgtgtt
aaaactccttacagaaaggacccagctgactctgaggctgtgttgtcagcagcacgtgaa
aaaatcagggtgtttcagaatgcactttcggagtgtgaagaagtggagaaggatgtggat
gaggctgagagggatgaggattccgaatgtgatgatgctgacgatgatgctgatggtgat
gacatgaatattgacgacaaggatgccaaatctcccctagttagagctcaagatggtgca
ccagttactgtagttggtttcataaagaaacaatcaaatagcgtggttaacacattagca
ccacaaatcccccagactaaatccagtgaaattgtctcattgcattcttttgacagtaaa
gcaagtacttcaactgatccagcggttggagatgacgctaaatacactgagatagatgaa
agtaaccaaggagaatcctgggtacaggggctagctgaaggtgactactgtgaccttagt
gtggatgaacgcctcaatgcgttggttgtgcttattggtgttgccactgaaggaaattct
atccgtgcaattctggaggaacgtctagaagcagcaagtgctttaaaaaaacaaatgtgg
gctgaggcacaacttgataaaaggcgtacaagggaggacttcaccagtaagacacaatat
gattcttgtgtgggtttgaaggttgacacagatcgagaaaataatgctgctgagaccctt
acaccagtgcataaccctattaaaaacaatgatggaaatgccagtacgacgaataacgat
ttgcttgttgataagcagaatcagcttattacgggcgatatagctcatcagcagaatggt
gtaagccgagaatcgagtattaatccagaaagcttgtctgttcagcagtatgcttcatct
gagaaaactcgttctcagttgaaatcctacataggtcacaaggcagaacagctttatgtt
tacagatcgctaccccttggacaagatcggaggcgcaaccgatattggcagttttctgca
tcttcatcgtcctatgaccctggttctggaagaatcttttttgaatctagagatggatac
tggagggtcattgactcagctgaggcatttgaagctttggtagcctcccttaatactcgt
ggcatccgagagtcacatctgcactcaatgttgcaaagtattgagccaacctttaaggaa
gctgttgagaggaaaaagtgttccactttagaacagccagctggacggattttgaaaaat
ggaagtaatgagataataagcccaaatcgtgtcaatgagtttggaagtccgtgcagtacc
ctttctggtgttgcttctgataaccttttggcacactcagatactttcaagatagagctt
gggcgtaatgaagccgagaagattgctatctcaaaaagggcttatgtgtttgtgaaatgg
atgtggagggagtgctacagtcaccaatctacatatgccatgaaatatggaaagaagcgg
taccctgagttgattcaatcttgtgaccattgctaccagatttacttaactgaagaaagg
cactgttcctcttgccacaagacgttcaaacccattcataatttcttggagcactcatca
caatgtgaagaaaaaaagagagcagatcctaattggaagatgcaaattgtggaccattct
gtgcccataggattgagattgctgaaactgctcttagctaccattgaggcttcagtacca
gcagaagctctacaaccattttggacggatgggtatcgaaaatcttggggtgcgaagttg
tactctgcatcgtctgctgaagaagtcttgcagatgctcactatgctggaaggtgcaata
aagcgagattacttgtcatctaactttgaaacaacaactgagttgcttaattcgaacaca
caagatactaaccagaattctgttgcacgttctggatctgttactgtacttccatgggtt
cctgatactactgctgctgttgccttaagattgttagatttggattcttctatatcatat
acatttcatccaaaagcagcatcaaataaggatcgagaagctggaaatttcacgaatctt
ccaccgaggtatcctgctattaggaacaaacaagaaatagaacactttggagttattggt
tttgaccaacaagatggaatgctgctagctaacagcaatggtcgtagaggtcgtggacgt
ggaagtcgaggaggtagcaggggaggtagatcccgtagtcgtggtggcaaggttcctaga
ggtattagcagctcttccaggattcagttcaggaatgacaacaatatttcatatgagaaa
ggccctcggaagattgcaaagaatacccgtgggcgtggccgcggccgcgggcgtgggcgt
gggcgtggccgtggtcgcggccgtggacttcgaacagttagacctcgccaaccgtctgag
ctcggcactagatcaattccaaaggcaaacttactgggcagctttagcatgttaagtaag
gcaaaccattctggaacggtgcattctcctgagagctcgggcgcagaagaatgggccttg
gagagaagggaatatgttgaagatgatgacaacaattcgttatctcaatccgatgaatca
gaagaaaatgaggagaatggtgagcccatgaatgaggaatatgatgatgagcagcaggtc
ccaggttatcgaagggacaattcaaagtccagccccctacagatgatggatgatggaagc
gaggataatgatgatgatgctgaaggagatgaagagggtgatgatggagaggactatgaa
gcggaagacgctggtggtgacgacgacgacgatatcgatatgggaggggatggtgatgac
gatgacgacgatgatgatggcggagatggagtggcaaatgcagatgtggatgaaggtggt
acttcatattcttcagagtatagcgaatga
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integrated database retrieval system
