Panicum virgatum (switchgrass): 120698213
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Entry
120698213 CDS
T07260
Name
(RefSeq) cyclic nucleotide-gated ion channel 4-like isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
120698213
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120698213
Ion channels [BR:
pvir04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120698213
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
120698213
NCBI-ProteinID:
XP_039837675
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Position
3K:complement(20071298..20076474)
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AA seq
696 aa
AA seq
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MSSDLSARSSPSSSTASPSGDARRTRDQVQATPPQQGRLANNAGRRGRRHRRGLPWRLGL
RGLGAAWALDPRARWVRDWNRAYLLACAAGLMVDPFFLYTVSVSGPLMCLFLDGWLAAAV
TALRCAVDAMHVWNVATQLRLWRDAARNKRAVDGSSGDEEQQAAAAEEEDEEEGAEAAQK
LPADARSKKALMLDFFVILPVMQVVVWVAAPAMIRAGLTTPVMTVLLLAFLVEYLPKICH
AVRFLRRMQAQSGYVFGTIWWGIVLNLMAYFVAAHAVGACWYMLGVQRASKCLEEQCRLQ
AGGCARGAVACAAPLYYGAAAPAGAGERLAWARNAQARGTCLTSGDGYQYGAYKWTVMLV
SNPSRLERVLLPIFWGLMTLSTFGNLESTTEWLEIVFNIVTITGGLVLVTMLIGNIKVFL
NATTSRKQAMHTRLRAVEWWMQRKGLPRAFRHRVRQFERQRWAATRGVDECQIVRDLPEG
LRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFPKGETQIVREGDVVQRMLFI
VRGHLRCSQALRNGATSSCTLGPGNFSGDELLSWCLRRPFRERLPTASATLVTLESTEAF
GLDAADVRYVTRHFRYTFAKDAVRRSARYYSPGWRTWAAVAVQLAWRRYKHRKTLASLSF
IRPRRPLSRCASLGEEKLRLYTAILTSPKPTQDHDF
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcgatctctccgcgcgctcgtcgccttcctcctccacagcgtcgccttccggt
gacgcgcggcggacacgagaccaagtgcaggcaacgccgccgcagcagggacgactggcg
aacaacgccggccgccggggtcggcgtcatcggcgcgggctgccgtggcgcctgggcctc
cgcgggctcggcgcggcgtgggcgctggacccgcgggcgaggtgggtccgggactggaac
cgcgcctacctgctcgcctgcgccgcggggctcatggtggacccgttcttcctgtacacc
gtgtccgtgagcggtccgctcatgtgcctcttcctcgacggctggctggccgccgccgtc
accgcgctgcgctgcgccgtggacgccatgcacgtgtggaacgtcgccacgcagctccgc
ctgtggcgcgacgcggcgcggaacaagcgcgcggtggacggcagctcgggcgacgaggag
cagcaggcggccgccgcggaggaggaggacgaggaggagggcgccgaggccgcgcaaaag
ctcccggcggacgcgaggtccaagaaggccttgatgctggacttcttcgtcatcctcccc
gtgatgcaggtggtggtgtgggtggcggcgccggcgatgatccgcgcggggctgacgacg
ccggtgatgacggtgctgctgctggcgttcctggtcgagtacctgcccaagatctgccac
gcggtgcgcttcctccggcggatgcaggcccagtccggctacgtcttcggcaccatctgg
tggggcatcgtgctcaacctcatggcctacttcgtcgccgcccacgccgtgggcgcgtgc
tggtacatgctcggggtccagcgggccagcaagtgcctcgaggagcagtgccggctgcag
gcgggcgggtgcgcgcgcggcgcggtggcctgcgccgcgccgctctactacggcgccgcc
gcccccgccggcgccggcgagcggctcgcgtgggcccggaacgcgcaggcccggggcacg
tgcctgaccagcggcgacggctaccagtacggcgcgtacaagtggacggtgatgctggtg
tcaaacccgagccggctggagcgcgtgctgctccccatcttctggggcctgatgacgctg
agcacgttcggcaacctggagagcacgaccgagtggctggagatcgtgttcaacatcgtg
accatcacgggcggcctggtcctggtcaccatgctcatcggcaacatcaaggtgttcctg
aacgcgaccacctcccggaagcaggcgatgcacacgcggctccgcgccgtggagtggtgg
atgcagcgcaagggcctgccgcgggcgttccggcaccgggtgcggcagttcgagcggcag
cggtgggccgccacgcgcggcgtggacgagtgccagatcgtgcgcgacctccccgagggc
ctccgccgcgacatcaagtaccacctgtgcctggacctcgtccgccaggtcccgctcttc
cagcacatggacgacctcgtgctcgagaacatctgcgaccgcgtcaagtccctcatcttc
cccaagggagagacgcagatcgtgagggagggcgacgtggtgcagcggatgctgttcatc
gtgcggggccacctgcggtgcagccaggcgctccggaacggggcgacgagcagctgcacg
ctggggccaggcaacttcagcggcgacgagctgctgtcgtggtgcctgcggcggccgttc
cgggagcggctgccgacggcgtcggcgacgctggtgacgctggagagcacggaggcgttc
gggctggacgccgcggacgtcaggtacgtgacgcggcacttccggtacacgttcgccaag
gacgcggtgcggcgcagcgcgcgctactactcgcccgggtggcgcacctgggccgccgtc
gccgtgcagctggcgtggcgccggtacaagcaccgcaagacgctggcgtcgctctccttc
atccgcccgcgccgcccgctgtcgcggtgcgcctcgctcggggaggagaagctccgcctc
tacaccgccatcctcacctcgcccaagcccacccaggaccacgacttctag
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