Panicum virgatum (switchgrass): 120698266
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Entry
120698266 CDS
T07260
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120698266
03036 Chromosome and associated proteins [BR:
pvir03036
]
120698266
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120698266
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120698266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
SH2
Tex_central_region
HHH_9
Tex_N
Motif
Other DBs
NCBI-GeneID:
120698266
NCBI-ProteinID:
XP_039837733
LinkDB
All DBs
Position
3K:complement(20742856..20751691)
Genome browser
AA seq
1637 aa
AA seq
DB search
MGRTVLSDDEEDDIEEVGEEEPRSSRRDGDDDDEDEEDDEEGQDEFEKDGFIVDDEDEED
EDGEEEEQKSDDERRKKKRKKKRESEDFMLDEDDYMLLQDNNITGISRPKPGNKFKRLKK
AGRESEMDERGLSDDDGTGKKRTGKERVEYSLFGDAQDAVTYEEDIIEDEQQVDEAEEPD
DDEDEMADFIVEEDEIDGNGQVVRRKKFKKKVPRQTAGVSSSALQEAQDIFGDVDDLLAR
RKQEMEREAINSGELRGKRLEDEFEPFILAEKYMTTKDEQIKENDVPERIQLSEELTGYP
PTDTTMVEEESVWIHSQLTGDGFLSFFGNEHVNKDIDQKDIVNVLNMLHVNKFEIPFIAM
YRKEMCPSLLRDPDSNDQDNKNNDQDTKNNDQDNKKGPEMRWHKLLWAVQTLDRKWLLLQ
KRKVALELYYEKRFDDEKRRIDDVTRQELNRQLYNSIIEALKDAKSEKEVEDVDAKFNLH
FPPGEVEEEGQFKRPKRKSLYSICHKAGLWEVASQFGRSAEQLGHHLTLTKIPEAGELDS
GKGSPEDVAANFTCAMFETAQDVLRGARHMAAVEIGCEPIIKKHIRGIFMEKAVVSTSPT
HEGNTIIDPYHQLSGVKWLREKPLCKFVDAQWLLIQKAEEEKLLKVTIKLPENAKKELMS
DARENYLSDCVSKTAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKHWLYMEYGK
QLWNKVTVAPWKKKDADKRDSDIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVL
YAGSISNRSQGIAETQRKKNDQQRVLKFMTDHQPHVVCVGASNYNCRQLKDDIYEVIFRI
VEDHPRDVNPQMENLAIVYGDESVPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLA
MIATLCGPGKEILSWKLHVLEQFLTPDEKYDIVEQVMVDATNQMGFDVNLAASHEWHFST
LQFIAGLGPRKASALQKDLVREGSIFSRKELVKPLGRKVFMNASGFLRVRRSGAAAASAQ
IIDLLEDTRIHPESYVLAKNLAKDVYAEDAPHEVNEMDDDEQEMAIEHVRENPCYLNRLV
IDEYIKSIPEEFRKKETLEAIREELKCGFSDWRTLYTEPSPDEEFWMLSGETEDMISEGR
IVQVTVRNIQESKIICTFDSGLKAIVMADNYSDEGFDPASSQLHEGDLLTGKIRNVNKNR
FMVYLTCKASEMRRRPFSRGDQDPYYHEQAMTSQTVEDKARKQKELAKKHFKPRMIVHPH
FQNLTAEEAMQFLSDKEPGEKVIRPSSRGPSFLTLTLKIFDGVFAHKEITEGGKDHKDIT
SLLRLGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLSYRKFRKGLKNEVDELLRAEKA
ENPMRIVYSFGISHEHPGTFILSYIRSTNPHHEYVGLYPKGFRFRKRDFDNIDRLVSYFQ
KNIDKPPPDAGPSMRNVAAMVPMKNSTWGSGGGAGGANDGWRGDSNNDRDRSFSGRSGGR
FDSRNNSGGRGRGRGRGRGNFGNEDNGGGWTDNIGSGRGGWGTGGSGGSSWGAGGNGRGS
GGGDAAGWGGGAGGDNNSGGGGWGTAAGGTNGAGGGSGGGWGEAAGGSNDSGWDSAKKAV
AAHDSGSGWGSGGGGGW
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcacggtgctctccgatgacgaagaagacgatatcgaggaggtcggggaggag
gaaccgcggtcctcgcggagggatggggacgatgatgatgaagacgaggaggatgacgaa
gaagggcaggatgaatttgagaaggatggctttatagttgatgatgaagatgaggaggat
gaggatggagaggaagaagaacagaaaagtgatgatgagaggagaaagaagaaaaggaag
aagaaaagggaatcagaagacttcatgcttgatgaggatgactacatgttgctgcaggat
aataacatcactggcatcagtcggccgaagcctggaaataagtttaaacgcttgaagaaa
gctggaagggaatctgaaatggatgagcgtggtttgtcagatgatgatggaactgggaaa
aaacgtactggcaaggagagagttgagtacagtttatttggtgacgctcaagatgctgtc
acctatgaggaggacatcattgaggacgagcagcaggtagatgaagctgaagaaccagat
gacgatgaggatgaaatggcagatttcattgtggaggaagatgaaattgatgggaacggc
caagttgtaagaaggaagaaatttaaaaagaaggtaccacgacaaactgctggtgtatca
tcatctgccctgcaagaggcccaagacatatttggtgatgttgatgacttgctagcacga
agaaagcaagaaatggagagggaggctattaactccggtgagttgaggggcaagaggctt
gaagatgagtttgagccatttattcttgcagagaagtatatgacaacaaaagatgagcaa
ataaaagaaaatgatgtgcctgagaggatacagctgtctgaagaattgactggctatcct
ccaacggataccacgatggtagaggaagaaagtgtatggatacacagccaactaactggg
gatggatttctttccttttttggcaatgagcatgtgaacaaggatattgaccagaaggat
attgttaacgtcctgaacatgttgcatgtcaacaaatttgaaattccattcattgcaatg
tatagaaaagagatgtgtccaagcctgttaagagatcctgattccaatgaccaggataat
aaaaacaatgaccaggatactaaaaacaatgaccaggataataaaaagggtcccgaaatg
aggtggcataaactactctgggcagttcagaccttagacagaaagtggctacttcttcag
aagcgcaaggtcgctttagagttgtattatgaaaagagatttgatgatgagaagcggagg
atagatgatgtcacaaggcaggaactaaaccggcaactttataattccatcattgaagca
ctaaaggatgctaaatctgagaaagaggtggaggatgttgatgcaaaattcaatttacac
ttccctccaggtgaagttgaagaagaaggacaatttaaacggccaaaaaggaaatccttg
tacagtatctgtcacaaggcagggttatgggaggttgccagccaatttggacgtagtgct
gagcaattaggtcaccatctgacattaacaaaaatacctgaagctggtgagcttgatagt
gggaaaggttcgcctgaagatgttgctgcaaatttcacttgtgcaatgtttgaaacagca
caagatgttcttcgtggtgcaagacacatggcagcagtcgagataggttgtgagccaatt
ataaaaaagcatattcgaggcatcttcatggagaaagcagttgtatcaacgagtcccaca
catgagggcaatacgatcatagatccatatcatcaactatcaggtgttaagtggctgaga
gagaaaccactgtgcaagtttgtagatgcacagtggctacttattcagaaagcagaggaa
gaaaagctcctcaaggttaccataaaactgcctgaaaatgcaaagaaagaactcatgtct
gatgcacgcgagaattaccttagtgattgtgtcagtaagactgcacaattgtgggatgag
caacggaagatgatactggatgatgccttctttaatttcctccttccatcaatggaaaag
gaggctcgatcgcttttgacagcaaaagccaaacattggctctatatggaatatgggaaa
cagttgtggaacaaggttactgttgctccttggaagaagaaggatgcagacaagagggat
tctgacattgatttggatgatgaatcggagttgagagttatggcctgctgctggggtcct
gggaagccagcaactacctttgtaatgctagactcatcaggagaattggttgatgttcta
tatgcaggttctatcagtaacaggtctcaaggaattgctgaaacgcagcggaagaagaat
gaccagcagcgagttttaaagtttatgactgatcatcaaccacatgttgtatgtgtagga
gcatcaaactacaattgcagacaactcaaggatgatatttatgaggttatttttagaatt
gtagaagatcatccaagagacgttaacccacaaatggaaaacttagccattgtctatggt
gacgagtctgtgcctcgcttatatgagaactcacgaatatcttcagatcaacttcctggc
caatcaggtattgtgaagcgtgctgtggcgcttggacgttatcttcagaatccattggca
atgattgcaacactatgtggacctggaaaagagatactctcttggaaactgcacgtgctt
gaacaatttcttactcctgatgagaagtatgatattgttgagcaagtaatggttgatgca
acaaatcagatgggttttgatgttaatcttgctgctagccatgagtggcatttctcgact
ttacaatttattgctggtctgggtccacgcaaagcttcagctttgcagaaagatctggta
agagagggatcaatttttagtcgcaaggagcttgtaaagcctctaggcaggaaagtattc
atgaatgcttctgggttcttacgtgtacggcggagtggtgcagctgcagccagtgctcag
atcattgatctgcttgaggatacaaggatccatcctgaatcatatgtattggcaaaaaat
ttggctaaggatgtctatgctgaggatgcaccacatgaagtgaatgagatggacgacgat
gaacaagagatggcgattgagcatgttagggaaaacccatgttatcttaatcgtcttgtc
attgacgaatatataaagagtattccagaggaattccgtaaaaaggaaacactggaggcc
ataagggaggaactgaagtgtggattctctgactggaggaccctgtataccgagcctagc
ccagatgaggaattctggatgctttctggtgaaactgaggatatgatatctgagggaagg
attgttcaagtaactgttcgtaatatacaagagagcaaaattatctgcacctttgattct
ggtctgaaggccatagttatggcagacaactattctgatgagggatttgatccagcatca
tcgcagttacatgaaggtgatctgttaaccggcaagattaggaatgtgaataaaaatagg
ttcatggtttacctaacatgcaaggctagtgaaatgaggagaagaccattctccagaggt
gatcaagacccctattatcatgaacaagccatgacctcacagactgtagaggataaggct
cggaagcaaaaggaacttgcaaagaaacatttcaagccccggatgattgtccaccctcac
tttcagaacctgacagctgaagaagccatgcagttcttatcagataaagagcctggtgag
aaggtcatccggccaagttctcggggaccatcatttttgactcttaccttgaaaattttt
gatggtgtttttgcacacaaggagataactgaaggtgggaaggatcacaaagatataaca
agtttgcttcgcctaggaaaaacactaacaattgacaatgaaactttcgaagaccttgat
gaggttatagacagatatgtggacccgttggtagggcacctgaaaagcatgctctcctac
cgtaaattcaggaaagggttaaaaaatgaggttgatgagttgttaagagcagagaaggca
gagaaccctatgagaatagtatatagctttggcatatctcatgaacatcctggcaccttt
atattgtcatatattaggagtacaaatccacatcacgagtatgttggattatacccaaag
ggcttcagattccggaagagagactttgacaacattgatcgccttgtgtcctatttccag
aagaatattgataaaccaccaccagatgccggaccatccatgcgaaatgttgcggctatg
gtgcctatgaaaaattcaacttggggttccggtggtggtgcaggtggtgcaaacgatgga
tggaggggagatagcaataatgatagggatagatcattttctggaagatcaggagggagg
tttgattcaaggaacaattctggtggtcgtggacgaggacgtgggcgtggtcgtggcaac
tttggcaatgaggacaatggtggaggctggacagataacattggcagtggcagaggtgga
tggggcacaggcggcagtggtggctcctcctggggtgctggtggtaatggcagaggatct
gggggtggggatgctgctggatgggggggtggagctggcggtgataacaacagtggtgga
ggcggctggggaacagcggctggtggtacaaacggtgctggtggtggaagtggagggggc
tggggagaagctgctggtggctctaacgactcaggatgggacagcgctaaaaaagccgta
gcagcacatgacagtgggagcggctggggctcaggtggcggcggtggctggtga
DBGET
integrated database retrieval system
