Panicum virgatum (switchgrass): 120698321
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Entry
120698321 CDS
T07260
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120698321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120698321
04121 Ubiquitin system [BR:
pvir04121
]
120698321
03036 Chromosome and associated proteins [BR:
pvir03036
]
120698321
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120698321
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120698321
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120698321
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120698321
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120698321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-HC5HC2H_2
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
120698321
NCBI-ProteinID:
XP_039837798
LinkDB
All DBs
Position
3K:21319265..21325266
Genome browser
AA seq
686 aa
AA seq
DB search
MSATHASIMVKAFGEMDNDIVDVLKQGQMQSQVLKRGKMQGDVLKQHQMQSDQLTRQFNS
PTKPSLAGATKASLLKGQNEKNVVEDAKIPSPRVKRNKTGPNQLSYKESNVSAKHVQSED
IGGTTELKRLLTPINLFEDECIFCHSFRTSQFHRSMVCYLKGRVVSIEEGNSSNAIYVHK
NCLEWAPRVWFKGDVVMNLESEIRRASRLRCRRCGLLGAALGCYDNDCKRSFHVPCALQI
GCRWDVDERLVLCPKHVSKTLPCDKPCTHTTGNDNSSSLHQSQKDSFTDLEEEGQKSDQL
KTTSPCTDKEGKLDNHHRENQQTDHLSTSNAASFPQSPYIQKEVIFDNHQRENQHQFNIL
NPPYSSQSQCSLREGISTNSSRDGKLIDQLDTSSFSSLPLGKHSDDEEICMNCERDDQRA
HKYNTSNLPSLPKSCHPDEEGISSVYKGEEIKAYQPGTSSFPSDQLVLLGLSLSAPEKDS
LQEFACWTKARLTKEWGENVTHVIVGKGAGTSWSRSFEALMAILLGKWVVHFEWIADCSS
EMTRRPESSYEVALSMDSLRTIDGPKKGRIQATKGAPKLKLFAGLCFCLSAYMDPDGRHR
VRNLIAAAGGQVLRGGFLDLLLGYSDGSSVGPYFVFDGDAPGEFFRSTLRKEEVEARKHA
AAGARVISHLRVLDAVAAYDADILDR
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctactcatgccagcataatggtcaaggcatttggagaaatggataatgatatt
gttgatgtccttaagcaaggtcaaatgcagagccaagtccttaaacgaggtaaaatgcag
ggcgatgtccttaagcaacatcaaatgcagagcgatcaattgaccagacaatttaactct
ccaactaagcccagccttgctggggctacaaaggcatcgctgttgaagggtcaaaatgag
aaaaatgtggtagaagatgcaaaaattccatcccctcgtgttaagcggaataagactgga
ccaaatcagctttcatataaagaaagcaatgtatctgcaaaacatgtccagtccgaagac
attggaggtactactgaattgaagagactgctaactccaattaacttattcgaagacgaa
tgcattttctgccattcatttagaacaagccagtttcatagatcgatggtatgttatcta
aagggaagagttgtgtccattgaagagggcaactcatcaaatgccatctatgtccataaa
aactgcctggagtgggctcctagagtgtggtttaagggtgacgttgttatgaacttggag
tcagaaatcagacgtgcttcaagactgagatgcagaagatgtggactcctgggagcagcc
ctcggttgttatgacaacgattgcaaaaggagttttcatgttccgtgtgcacttcagatt
ggttgccgctgggatgttgatgaacgtcttgtgctgtgccctaaacatgtttcaaagaca
ctaccctgtgataagccgtgtacacatacaacgggaaatgacaattcttcttccttgcat
caaagccaaaaagattctttcaccgatttagaagaggaaggccaaaaatctgaccagctt
aaaaccacaagcccatgtacagacaaggaaggaaaacttgacaatcatcatagggaaaat
caacaaacagatcacctcagcacttctaatgctgcatcatttcctcagagcccatatata
caaaaggaagtaatttttgacaatcatcaaagggaaaatcagcatcagtttaacattttg
aatcctccgtactcaagtcaaagccaatgttctctaagagaagggatttccaccaatagc
tcaagagatgggaagctaattgatcagcttgatacctcaagtttttcttccttgccactg
gggaaacattcagatgatgaagaaatttgtatgaattgtgaaagggatgatcaacgagca
cataagtacaacacctcaaatttgccctccttgcctaagagctgtcatccagatgaagaa
ggaatttccagtgtttacaaaggggaagaaataaaagcatatcagcccggcacatcaagc
ttcccttctgatcagttggttttgcttggattgtctttaagtgcaccagagaaggattcc
ttgcaggagtttgcatgttggaccaaggcgaggctaacgaaagagtggggtgaaaatgtg
actcatgtcatcgtgggcaaaggtgctggcacctcatggagcagatcatttgaagccctc
atggcaatactgcttgggaaatgggttgtccattttgaatggattgcggactgctcctcg
gagatgactcggcgtccagaatcctcttatgaggtagcactcagcatggattcgctccga
acaatcgacggaccgaagaagggaagaatccaagcaaccaaaggggcaccgaagctgaag
ctgttcgcgggactgtgcttctgcctcagcgcctacatggacccagacggcagacaccgc
gtgcgcaacctcatcgcggccgcgggagggcaggtcctgaggggagggttcctggacctg
ctgctcggatactccgacggctcgtcggtggggccgtactttgtcttcgacggcgacgcg
cccggagaatttttcaggagcacgctgcgtaaggaggaggtggaggcgaggaagcacgcg
gccgcgggggcgcgggtgatcagccacttgagggtgctggacgccgtcgcggcgtacgac
gcggacatcctggaccgctga
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