Panicum virgatum (switchgrass): 120698359
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Entry
120698359 CDS
T07260
Name
(RefSeq) zinc finger matrin-type protein 2-like
KO
K12848
U4/U6.U5 tri-snRNP component SNU23
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120698359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120698359
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120698359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-met
zf-C2H2_jaz
zf-U1
C2H2-zf_KIN17
SNRNP27
zf-C2H2
Vfa1
Motif
Other DBs
NCBI-GeneID:
120698359
NCBI-ProteinID:
XP_039837857
LinkDB
All DBs
Position
3K:21889045..21892172
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AA seq
201 aa
AA seq
DB search
MSGNPVGVDNTGRRKFDKEEYLERARQREQREKEEARKGKERGPPVQRQPLKHRDYEVDL
ESRLGKTQVVTPIAPLNQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS
LEQVQKRFEALKKRKDPSTFTEQDLDERIMKQQQEEEERKRQRKEKKKEKKREQAAQHEP
EDVDPDIAAMMGFGGFGSSKK
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaatccagttggagttgacaacactggacggaggaaatttgacaaggaagag
tacttggagcgagctcgacagagggaacaacgggagaaggaggaagcccggaaaggcaaa
gaaaggggccctcctgtgcaaagacaacctttgaagcacagagactatgaagttgatctc
gagtctcgtcttggcaagactcaggtggtgaccccaattgcaccattgaatcagcaggct
ggatactactgttctgtttgtgaatgtgttgttaaagattcagccaactatttggatcat
ataaatggcaagaagcatcagagagcgttgggcatgtctatgcgtgttgaaagggcatca
cttgaacaggttcagaaaaggtttgaggcacttaagaagaggaaggacccgagcaccttt
actgaacaagatttggatgagagaataatgaaacaacaacaagaggaggaggagaggaaa
cggcaacgcaaagaaaagaaaaaggagaagaaaagagaacaggcagcccaacacgagcct
gaggacgttgaccctgacattgctgccatgatgggtttcggggggttcggttcctcgaag
aagtga
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