Panicum virgatum (switchgrass): 120698412
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Entry
120698412 CDS
T07260
Name
(RefSeq) probable DNA helicase MCM8 isoform X1
KO
K10737
DNA helicase MCM8 [EC:
5.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120698412
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120698412
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120698412
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120698412
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120698412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCM
MCM_OB
MCM_lid
WHD_MCM8
Mg_chelatase
AAA_5
AAA_3
Sigma54_activat
AAA_16
AAA
AAA_22
FtsK_SpoIIIE
AAA_lid_2
Motif
Other DBs
NCBI-GeneID:
120698412
NCBI-ProteinID:
XP_039837926
LinkDB
All DBs
Position
3K:complement(22665125..22679250)
Genome browser
AA seq
775 aa
AA seq
DB search
MNADEMKVQAGGRTVDLGRVWGNYFTDEADRSVSDHRTQLAADLVECFSEEVKDFTSDII
PLPIDFQEFQEVCKFIKAELEESPKDALLCMGAAAHLVLCSAKNFKLSHINKINVRLYNT
GATIALKKLKAAFIKKLVTVHGTVVKVSTVKPLVLQLKFKCMKCTEEIKRLFCDGKFSPP
MSCDTPGCKSRTFTPDRSSAELIDVQKIRIQELASAEGHGEGRVPRTVECELTEDLVDCC
IPGEIVTVTGIVKVLNNYMDVGGGTGKSKGRNQGLYYLYLEAISVRNLKSNAVSDEEIRA
SGISNFQTCSDRDLEFVVKYKEQHGPDVFRQMLQSFSPSIYGHELVKAGITLALFGGVQK
NSADQNKVPVRGDIHVVVVGDPGLGKSQLLQAAAAISPRGIYVCGNTTTKAGLTVAVVKD
SLTNDYAFEAGAIVLADRGVCCIDEFDKMSAEHQALLEAMEQQCVSVAKAGLVASLSART
SVLAAANPVGGHYDRAKTVNENLKMSAALLSHFDLVFILLDKPDEMLDKRVSDHIIALHS
NDRDHSASNKRIKTVSPCNVDLGFGVGGNSFASRLRLHPEKDKIFAPLAGQLLRKYISFA
REHVHPRMSKAAGDILQEFYLRLRKGSTSADGTPITARQLESLARLAEARARVDLRDEVT
AEDAKDAVEIMRESLYDKYVDENGCGDFTRSGGMSQPKEAKRFMNELNKQSELQQKSYFS
RTEIYSLADKISLRVPDVDALVENLDIEGFLLQKGSGMYQLAASSYSQYQPTRSR
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgacgaaatgaaggtccaagccggcggccgcaccgtggatcttgggcgggtc
tggggaaattacttcaccgacgaggccgaccgctccgtgtccgaccacaggacccagctc
gccgccgacctggttgaatgcttctccgaggaggttaaagattttaccagtgacatcata
ccccttccgattgacttccaggagtttcaggaagtatgcaagtttattaaagctgaactt
gaggaatctcctaaagatgccttgctttgcatgggagctgcagcacatctggttttgtgt
tcagccaaaaacttcaagttgagccacatcaacaagatcaacgtcaggctttacaacaca
ggggcgacaattgctttaaagaaactaaaagcggcctttattaagaaacttgtcacagtg
cacggtacagttgtaaaagtcagcactgtgaagcctcttgttctgcaactgaagttcaaa
tgcatgaaatgtactgaagaaatcaaacgtttgttctgtgatgggaaattttcacctcca
atgtcctgtgataccccgggatgcaaaagcagaaccttcaccccagatagatctagtgca
gagttgatagatgtccagaaaataaggattcaggagcttgctagtgctgaaggccatgga
gaaggccgagtgccacgaactgtagagtgtgagcttacagaagatcttgttgattgttgc
ataccgggagagattgtaacagtaactggaattgtgaaagtactgaacaactatatggat
gttggaggaggtacagggaagtccaaaggcaggaatcagggtttgtactacctgtacctg
gaagcaatttcagtgagaaacttgaagtccaatgctgtttcagatgaagaaattcgggcc
agtggaatatccaattttcagacttgtagtgatagggatcttgaatttgtagtcaaatat
aaagaacaacatggccctgatgtatttcggcagatgcttcagtcctttagtccctccatt
tatgggcatgaacttgtaaaagctggtatcacccttgcacttttcggtggtgtgcaaaag
aactcagctgatcaaaacaaggtccctgttcgaggagacattcatgttgttgtcgttggt
gatccgggactaggcaagagtcaactcctccaagctgcagcagctatttccccacgagga
atatatgtatgtgggaatacaacaacaaaggccggtctaactgtcgctgtggttaaagat
tctttgacaaatgattatgcgtttgaggctggcgccatagtccttgctgaccgtggagtt
tgctgcatagatgagttcgataaaatgtcggcagaacatcaggctttactggaagccatg
gagcagcagtgtgtgtctgttgcaaaggctggccttgtagcaagtttatcagctcgtacc
tctgtgttggcagctgcaaatcctgttggtggtcattatgaccgagcaaagacagtgaac
gagaatctaaagatgagtgctgcgctcctctctcattttgacttggttttcattctactt
gacaagccagatgagatgctagataaaagagtgtcagaccatataattgctctccatagt
aatgacagagatcacagtgcatccaacaagaggattaaaacagtgtcaccatgtaatgtt
gatctgggatttggagttggtggaaattcatttgcttcaaggctgaggttacacccagag
aaagacaaaatttttgctccattggctggacaacttcttcgcaagtatatatcttttgca
agagaacatgttcacccaagaatgtcaaaagcagcaggtgatattttgcaagaattctat
ttgaggttgagaaaggggagcacttctgctgatggtacgcccatcacagccaggcagtta
gaaagccttgccagattggctgaagctcgtgctcgtgtggatctaagagatgaagtgact
gcagaagatgctaaggatgctgtagagatcatgagagaatccttgtatgacaaatatgtt
gatgaaaacggttgtggggactttactcggagcggtgggatgagccaacccaaggaggca
aagcgatttatgaatgagttaaacaagcaatctgagttgcagcaaaaaagttacttttcg
agaactgagatttacagcttagctgataagatcagcttgcgagttccagacgtagatgcc
ctcgtggaaaatcttgacattgaaggttttcttctgcaaaagggatcaggaatgtatcag
ctggcagcatcatcatattcacagtaccagccaacaagatcaagatga
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