KEGG   Panicum virgatum (switchgrass): 120698731
Entry
120698731         CDS       T07260                                 
Name
(RefSeq) LEC14B protein-like
  KO
K11801  DDB1- and CUL4-associated factor 11
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120698731
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     120698731
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_EIPR1 WDR54 Beta-prop_SCAP Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Cytochrom_D1 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_NUP159_NUP214 WD_LRWD1
Other DBs
NCBI-GeneID: 120698731
NCBI-ProteinID: XP_039838377
LinkDB
Position
3K:27042184..27049045
AA seq 461 aa
MGYGMSRLEDEYYEPEGQDTDGSSSVQVNDDFSKLHNDIFHMTRMRSGLSESIYKSIGTN
RGIISMAKLLSGREVDCSGKGMFSSGDRAFVRGRYVPMNGPEFLDMMDSRAYVSQFSADG
TLFVAGFQGSRIRIYDVDRGWIVHKDIHARSLRWTISDVSLSPDQRYLVYSSLAPIIHIV
NVGNAARESYANVTDIHDGLDFSQHEDVQYAFGIFSVKFSSDGRELVAGSNDESIYVYDL
HANKLTLRLPAHTSDVNTVAFADESGHLIYSGSDDTLCKVWDRRCLSTGQAAGVLTGHLH
GITHIDSRGDGRSFISNGKDQAIKLWDIRKMMSNADSCADGAPSWDYRYSRYPKHHKQLK
HPHDQSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSYDSNVYIYDVVSGSQVAKLNG
HQMAIRDCSWHPIEPALVSSSWDGRVAKWTSARDEEAYDVD
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgggttacggcatgagtaggctagaagatgaatactatgagcctgaagggcaggatact
gatggatctagttcagttcaagtgaatgatgatttctcaaaattacataatgatattttc
catatgacccgaatgagatcaggacttagtgaaagcatttataagtccataggtaccaac
agaggcataatatcaatggccaagttgttatctggaagggaagttgattgttctggaaag
gggatgttctcttcaggtgaccgtgcatttgttcgaggtcgctatgttccaatgaatggt
cctgaattcttggatatgatggattctcgtgcttatgtttcacagttttctgccgatggt
actctttttgttgctggttttcagggaagtcgcataagaatatatgatgttgatagaggc
tggatcgtacacaaggacattcatgctagaagtctgagatggacaatcagtgatgtatcc
ttatcacccgatcaacggtaccttgtctactctagtctggcacctattatccatattgtc
aatgttgggaatgcggcaagagaatcctatgctaatgtcactgacattcatgatggattg
gatttttcacagcatgaagatgttcaatatgcctttggaatattttctgtgaagttttcc
tctgatggccgggaacttgttgctggcagcaatgatgaatcaatatatgtctacgacctt
cacgcaaacaaattgacattgcgtttacctgctcatacatctgatgtcaatacagtagca
tttgctgatgaaagtggccatctcatatattctggaagtgatgacacattatgcaaggta
tgggacagacgttgtttgtccacaggacaagctgctggggttttgactggacatttgcat
ggaataacgcatattgatagtcgtggagatggccggagtttcatatccaatggaaaagac
caagcaatcaaattgtgggacattaggaaaatgatgtccaatgctgatagttgtgcagat
ggagccccgagttgggactacagatattcaaggtatccaaagcatcataaacaattaaag
catccgcacgaccagtcattagctacataccggggtcactcagtcctccgcacattgatc
cgttgctacttttctcctgcctatagcaccgggcaaaagtacatatatacaggatcatat
gattcgaacgtttacatctatgatgtggttagcggatcgcaagttgcgaaactgaacggg
catcaaatggcaattcgcgactgtagctggcacccaattgagcccgcgcttgtgagctca
tcctgggacggccgggtggctaaatggaccagtgcccgtgacgaagaggcttacgatgtg
gattag

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