Panicum virgatum (switchgrass): 120698806
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Entry
120698806 CDS
T07260
Name
(RefSeq) isoamylase 2, chloroplastic-like
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00500
Starch and sucrose metabolism
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
120698806
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
120698806
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Motif
Pfam:
CBM_48
Alpha-amylase
ISOA1-3_C
Isoamylase_C
Motif
Other DBs
NCBI-GeneID:
120698806
NCBI-ProteinID:
XP_039838479
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Position
3K:27945407..27960716
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AA seq
805 aa
AA seq
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MAMASSLPAPPAPPPASWRGGPPPRRPPPRRGPLLARAAAARSWRYRFRTDDDGVVDVAV
AGKDGGAGYAVAVEVPDLGGREGGLVLRAAGSGEAAPLAPAPGGALAAELSYDGARAPFH
VSFLLADAAGAEVRTHRGTSFRVPVGVGRGRPAPLGLSRSDDGAANFAVYSKSAKAVVLC
LFGGWDAGGDEPALEVELDPYVHRTGDVWHVSLESVEGYASYGFRTGLFALFGIDRPLLD
PYTKVIGNFVPDDTVNDDGLSVPSIRCLGSLENAPGYNWGRDKHPCLPLEKLVVYRANVA
LFTKDTSSGLPDNVAGTFSGLAAKVEHFRRLGVNAVLLEPVFPFHQVKGPYFPYHFFSPM
SLYSSERSSASAIKSMKDMVKTMHRNGIEVFLEVVFTHTVEGGAECQMISIRGIDGSSYY
IADGIAGCKASVLNCNHPVTQKLILDSLRHWVLDFHVDGFCFINAPFLVRGPGGEGLPRP
PLLEAIAFDPVLSKTKIIADPWSPLDISNVQFPFPHWKRWAEINTRFSMDVRKFLKGEAL
ISDLATRLCGSGDLFSSRCPAFSFNYVSRNSGLTLVDLVSFSSDELGSEFSWNCGEEGPS
ENNAVLLTRLRQIRSFLFILFVSLGIPVLNMGDECGHSAAGSTSYKDRGPLNWKALKTMF
VKEVTGFISFLSALRSRRADIFQRREFLKLENIHWYGSDLSEPRWEDPTSNFLCMHINPE
LDENVPDSVRGDLYICFNANEESVSATLPALAEGSTWLRLVDTSLAFPGFFSSESSPNVH
QLLGLSSYQVKAHSCVLFESKRVLS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggccatggcctcctccctccccgcgccgccggccccgccccccgcctcctggcgcggc
ggccccccgccccgccgcccgccgccgcgccgcggcccactcctcgctcgcgccgcggcg
gcgcgctcctggcgctaccggttccggaccgacgacgacggcgtggtggacgtggccgtc
gccgggaaggacggcggcgccgggtacgcggtcgccgtcgaggtcccggacctgggcggg
cgggagggcgggctggtgctccgcgccgcgggctccggcgaggccgccccgctggcgccc
gcgccgggaggcgcgctcgcggccgagctctcctacgacggggcccgcgcgccgttccac
gtctcgttcctgctggccgacgcggcgggggcggaggtacggacgcaccgcgggacgagc
ttccgcgtgcccgtcggcgtcggccggggccgccccgcgccgctcggcctgtcccggtcc
gacgacggggccgccaacttcgcggtgtacagcaagagcgccaaggccgtcgtgctctgc
ctgttcggcggctgggacgccggcggcgacgagcctgcgctggaggtcgagctcgacccg
tacgtccaccggacgggcgatgtctggcacgtctcgctcgagagtgtcgagggatacgcc
agctacggcttccgcaccgggctgttcgccttgttcggcattgaccgcccgctgctcgac
ccatacacaaaggtgattgggaacttcgtccctgacgatactgttaacgacgacgggctc
tccgtgccatccataaggtgcctcgggtctttggagaatgcacctggttacaattggggc
agggacaagcacccgtgcttgccgttggagaagctggtggtataccgggcaaatgtggcc
ttgttcaccaaggacacgtcgagcgggttgccggacaatgtcgccggtactttctctggg
ttggctgcaaaggtagaacacttcagacgtctcggcgtaaatgcggttttgctggagcca
gtgttcccattccaccaggtcaagggaccctactttccctaccatttcttttcaccgatg
agcttgtatagcagtgaacgttccagtgcctcagctattaagtctatgaaggatatggtc
aagacaatgcacaggaatggaatagaggttttcttggaggttgttttcacgcatactgtt
gaaggaggagcagagtgtcagatgatatcgatccgtggcattgatggttcctcatactac
attgctgatggaattgctggatgcaaggcaagcgtattgaattgtaatcatcccgtgacc
cagaagctaattttggacagcctccgccattgggtgcttgatttccatgtcgatgggttc
tgcttcatcaatgcccctttccttgtcagaggtccaggtggcgagggcctgccgcggcct
ccccttcttgaagccatagcatttgaccctgtgctttcaaagactaagatcattgcagat
ccatggtctccacttgacatatctaatgtgcaatttccattccctcattggaaaagatgg
gctgagattaacacaagattctctatggatgtgcgcaagtttcttaagggagaagcactt
attagtgatcttgctacacgtttgtgtggcagcggggacctattttcctcaagatgccca
gcattctcgttcaattatgtatcaaggaattctggacttactcttgttgatctggtgagc
ttcagcagtgatgagcttggttctgagttcagctggaactgtggtgaagaaggaccatca
gagaacaatgcagtccttctaacgaggttaaggcagatacgcagtttcttgtttattcta
tttgtttcccttggtattcctgttctgaacatgggagatgaatgtgggcactctgctgct
ggttcaacatcatacaaggatagaggtcctctgaattggaaagccttgaaaaccatgttt
gttaaggaagttaccgggtttatttcatttctatctgcactgaggagccgacgagcagac
atttttcagagaagagaatttctaaaacttgaaaatatacattggtatggtagcgaccta
tctgagccacgatgggaggatcctactagtaactttctttgcatgcacataaatccagag
ctggatgaaaatgtgccagattcagtcagaggtgatttgtatatctgtttcaatgcaaat
gaggaatcagtgagtgctactctaccggctcttgcagaaggatctacatggctgcgcttg
gttgatacatcacttgcatttcctggtttcttttcaagcgagtctagtcctaatgtacac
caactcctaggattgtcctcttatcaagtaaaagcacatagttgtgttttgtttgaatcg
aagagggttctttcctag
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