Panicum virgatum (switchgrass): 120698817
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Entry
120698817 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase KEG-like
KO
K16279
E3 ubiquitin-protein ligase KEG [EC:
2.7.11.1
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pvir01001
]
120698817
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120698817
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120698817
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120698817
Protein kinases [BR:
pvir01001
]
Serine/threonine kinases: TKL group
RIPK family [OT]
120698817
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120698817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_15
Ank_2
Ank
Pkinase
Ank_4
PK_Tyr_Ser-Thr
Ank_5
Ank_3
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120698817
NCBI-ProteinID:
XP_039838494
LinkDB
All DBs
Position
3K:28190953..28210692
Genome browser
AA seq
1631 aa
AA seq
DB search
MRVPCCSLCNVRYDEDERTPLLLHCGHGFCRACLSRMLAAAPGATLPCPRCRHLTAVGNS
VSALRKNFPILSLLSASPSSPSFLHSDSGSSSDGSDDEDDFFARPSRRPAPAPAAAPPGC
SSFDLASHPDLKLARRIGSGPPGPAGQEVWAGTLSRRCSGAGGGAKRCKHQVAVKRVPVA
AGDGLEGVQEEVERLRRASTWCRNVCTFHGAVRVGGHLCFVMDRYVGSVQAEMRQNGGRL
TLEQILRYGADIARGVAELHAAGIVCMSIKPSNILLDASGHAVVSDYGLSAILKNLTSRR
GPDDSSAGIDATLLSPNYTAPEAWGPLKKSLNMFWDSANGISPESDAWSFGCTLVEMCTG
AVPWAGLSAEEICKSVVKEKKPPPQYSRVVGVGLPGELWKMIGDCLQFRASRRPSFQDML
KTFLRHLLDIPRSPPASSENDFTNESLPNGIEPPTTSILEMVHDNPNALHHLVCEGDAAG
VRDLLAKAASERNGSLIRSLLEAQNTDGHTALHLACRRGSAELVEAIVAYQENVDILDKD
EDPPIVFALAAGSPRCVRALVSRSASINSRLREGLGPTLAHVCAHHGQPECMQELLMAGA
DPNAVDGEGESVLHIAVARRYTDCAIVILENGGCRSMGVPNSHHKTPLHLCIETWNTAVV
RRWVEVASLEEIAEAIDVPSPVGTALCMAAALKKEHEKEGRELVRILLAAGADPTAQDDP
HCRTALHTAAMIDDVELVKIILEAGVDVNIRNAQNTTPLHVALNRGANSCVGLLLAAGAN
CNIQDDDGDNAFHIAADAAKMIRENLTWIVQMLQQPSPAVDVRNHRGWTLRDFLERLPRE
WIYEELMETLEDKGVHLSPTIYEVADWVKFRRNVTSPAFGWQGAGPRSIGFVQSIVDNDH
LVVSFCTGEARVLTSEVIKVIPLNRGQHVQLKPDVSEPRFGWRGQSRDSIGTVLCVDDDG
ILRVGFPGASRGWRADPAEIERVEEYKVGNWVRIRPSLTVAVHGMESITPGSVGIVYSIR
PDSSLLLGLCYLSNPWLCEPEEVEHVDPFKIGDQVCVKRSVAEPRYAWGGETHHSVGKII
DIESDGLLIIDIPNRALPWQADPSDMEKIENFKVGDWVRVKATVPSPKYGWEDVTRNSIG
IVHSLQDDGDAGIAFCFRSKLFLCSVADVEKAQPFEVGEKVHVSPSISQPRLGWLNETAA
TIGAIARIDMDGTLNIKVSGRKSLWKVAPGDAERLSAFEVGDWVRQKPSIGSRPTYDWNS
IGKISIAVVHSIQDSGYLELAGCFRNGKWLTHNTDIEKVEPFKIGQHVRFRAGISEPRWG
WRDANPDSRGIIAGVHADGEVRVAFFGVPGLWRGDPADLEIEKIFEVGEWVRLRNDADQW
KSLRPGSIGVVHGVGYHGDAWDGTIHVAFCGEQERWIGPSSQLEGVSKFVVGQRVRIRGG
IRQPRFGWSNHNHSSIGTISSIDADGKLRIHTPAGARAWLIDPAEVEKVEEEEEICVGDW
VKVKDSIATPTYQWGDVNHNSIGVVHRADDGELWIAFCFCERLWLCKAWEMEKVRPFQQG
DRVRIRPGLVSPRWGWGMETYASKGEVIGVDANGKLRIKFRWRDRLWIGDPADIVLDDAP
SLTEAPNGFYS
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgccgtgctgctcgctgtgcaacgtccggtacgacgaggacgagcggacgccg
ctgctcctccactgcggccacggcttctgccgcgcgtgcctctcccgcatgctcgcggcc
gcccccggcgccacgctgccgtgcccgcggtgccgccacctgaccgccgtcggcaactcc
gtctccgcgctgcggaagaacttcccgatcctctcgctcctctctgcgtccccctcgtcc
ccctccttcctccactccgactcggggtcgtcctccgacggctccgacgacgaggacgac
ttcttcgcgcgccccagccgccgccccgcgcccgcgcccgctgccgcgccgcccggatgc
agctcgttcgacctcgcctcgcacccggacctcaagctcgcgcgccgcatcgggagcggc
cctcccgggcccgccgggcaggaggtgtgggccggcacgctgtcccgtcgctgcagtggc
gccggcggcggggccaagcggtgcaagcatcaggtggcggtgaagagggtgcccgtggct
gcaggagacgggctcgagggggttcaagaggaggtggagcggctgaggcgtgcctccaca
tggtgccggaacgtgtgcaccttccatggcgccgtcagggtcggtggccacctctgcttc
gtgatggatcgatatgtagggtctgtgcaggcggagatgcggcagaatggtggacgactc
acgctggagcagattctcaggtatggagcagatattgcccgtggagtagcagaacttcat
gcagcgggtattgtttgtatgagcataaagccatcaaacattcttttggatgcaagtgga
catgctgtcgtttcagattatggtctttcagcaattctgaagaatcttactagtaggaga
ggacctgatgactccagtgctggcattgatgctacactgcttagccccaattatacagct
ccggaggcatggggaccattgaagaagtcattgaatatgttttgggatagtgcaaatggc
atatctccagagtcagatgcatggagtttcggttgcacacttgtggaaatgtgtactggt
gctgtaccatgggctggactaagcgcggaggaaatctgtaagtctgttgtgaaagagaag
aagccaccacctcaatattcaagagtagtaggtgtaggacttcctggggagttgtggaag
atgattggtgattgtttgcagttccgagcttcaagaagaccatctttccaggacatgcta
aaaacttttctccgacatcttctggacataccacggagcccacctgctagttctgagaat
gatttcacaaatgaaagcttgcccaatggcatagaacctccaacaacctccatcctggag
atggttcatgataatccaaatgccttacaccatcttgtatgtgaaggagatgctgctggt
gttagggatctacttgcaaaggccgcatcggagagaaatggtagtttaattcgttctctc
ttagaagcacaaaatacagatgggcacactgccttacatttagcatgccgccgaggctca
gcagagcttgtggaagctattgtggcttaccaagagaatgtagacatattagacaaggat
gaagaccctcctatagtttttgctttggctgctggctctcctcgatgtgttcgtgcactt
gtaagcaggtctgctagtatcaattctaggcttagagaaggcctgggtcctacccttgcc
catgtctgtgcccatcatggtcaaccggagtgcatgcaagaactgctgatggctggagct
gatcctaatgcagtagatggagaaggtgaatctgtcctgcatattgctgtggccaggaga
tatactgattgtgctattgtcatactggaaaatggaggctgcagatcgatgggcgtacca
aattctcatcataaaacgccattgcatctatgtatcgaaacatggaacacggctgtggtt
agaagatgggttgaagttgcatctttagaggagattgcagaagcaattgatgtacccagc
cctgttgggacagctttatgcatggcagcagctcttaaaaaggagcacgagaaagagggt
agagagttagtaagaattttgctcgctgctggtgctgatcctacagcacaagatgatcca
cactgcagaactgcattacatactgcagcaatgattgatgatgtggaactggttaagatc
atactggaagcaggagttgatgtaaatataagaaatgctcaaaatacaaccccactccat
gttgcacttaacagaggtgcaaactcgtgcgttggcttgcttttggcagctggagcaaac
tgcaacatacaggatgatgatggtgacaatgcttttcacatagctgctgatgcagcaaaa
atgatacgtgaaaacctgacttggattgttcaaatgctacaacagccgtcaccagctgtt
gatgtgagaaaccaccgaggctggacactaagagattttcttgagaggcttccacgagaa
tggatttatgaagaattgatggaaacacttgaagataaaggagttcatctctccccaacc
atatacgaggttgcagattgggtgaaatttagaagaaatgtaacttcgccagcttttgga
tggcaaggtgcaggacccaggagcattggttttgtccaatctattgtagacaatgaccac
cttgttgtgtcattttgtactggagaagcacgtgttttgacaagtgaagttatcaaagtc
attccattaaataggggccaacatgtgcagctcaagccagatgtttcagagcctagattt
ggatggcgtggtcagtcgcgagatagcattgggacggttctctgtgttgacgatgatgga
atcttgagggttggtttcccaggagcttctaggggatggagagctgatcctgctgagatt
gaaagggttgaagaatataaggttggtaactgggttcggattcgtccttcactaacggtt
gctgtacatggcatggagtctattactcctggaagtgttggtattgtatactccatcaga
ccagatagcagtcttctgttgggcctttgctacttgtccaatccatggttgtgtgaacca
gaggaggtcgaacatgtcgacccgttcaagattggcgaccaagtatgtgtaaaacggtct
gttgcagagcccagatatgcatggggtggtgagacccatcacagtgtggggaaaataatt
gacatcgagagtgatggtctgctcatcattgatattcctaatcgggctttaccatggcag
gcagatccgtcagacatggagaagatcgagaactttaaggttggtgattgggttagagtc
aaagcaacggtaccatcaccaaaatatggatgggaggatgtgactcgtaatagtattgga
atagtgcatagcctacaagatgatggggatgctggtattgctttctgcttcagaagcaag
ctttttctttgttctgttgcagacgtggagaaggcacagccatttgaggtaggggaaaag
gttcatgtatcaccttccatatctcagccacgccttggatggttgaatgaaactgcagca
accattggagccatagcaaggattgacatggatgggactttaaatatcaaggtttctggc
agaaaaagcttgtggaaggttgctcctggtgacgctgagaggctttcagcttttgaggtt
ggagactgggtccgccagaaaccaagtattgggagcagacctacttatgactggaatagt
attggcaaaataagcattgcagtagtccacagcattcaggactctggttacttggagcta
gccggttgcttcaggaatgggaaatggttaactcataacacagacattgagaaggtagag
ccctttaagattggtcagcatgttcggtttcgtgccggaatttcagagcctagatgggga
tggagagatgcaaatcctgattctagaggcataatcgctggtgtacatgctgacggagaa
gttagggttgccttcttcggtgtgcctggattgtggagaggtgatcctgcagatcttgaa
atcgagaaaatctttgaggttggagagtgggttaggctgaggaacgatgcggatcaatgg
aaatcgctcagacctggtagcattggtgtggtgcatggggtgggatatcatggtgatgct
tgggatggaaccattcatgtggctttctgtggtgagcaggaaaggtggatagggccttct
agccagcttgaaggagttagcaagtttgttgttgggcagcgtgttcgaatcagaggaggt
atccgccagccaagattcggttggtctaatcacaatcattcgagtatagggacgatctca
tctattgacgccgatgggaaactaaggattcacacaccagctggtgccagggcttggttg
atagacccagcagaggtggagaaagtggaggaagaggaggaaatctgtgtcggggactgg
gtgaaggttaaggactccattgcgaccccaacatatcaatggggtgatgtgaaccacaac
agcataggggtggtccaccgggctgatgatggagagctctggattgctttctgcttctgt
gagagattatggttgtgcaaagcatgggaaatggagaaggtgagacccttccaacaaggg
gatagagtacggatacgaccaggtcttgtatcccccaggtggggttgggggatggagacc
tatgccagcaaaggtgaggttataggtgtcgatgcaaatggaaaactgaggatcaaattt
cggtggagggatagactttggatcggggaccctgctgatatcgttctcgatgatgccccc
tcactgacagaggctcctaatggcttttattcatag
DBGET
integrated database retrieval system
