KEGG   Panicum virgatum (switchgrass): 120698899
Entry
120698899         CDS       T07260                                 
Name
(RefSeq) elongation factor 1-alpha-like
  KO
K03231  elongation factor 1-alpha
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120698899
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120698899
   03016 Transfer RNA biogenesis [BR:pvir03016]
    120698899
   03012 Translation factors [BR:pvir03012]
    120698899
   04131 Membrane trafficking [BR:pvir04131]
    120698899
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120698899
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     120698899
Transfer RNA biogenesis [BR:pvir03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    120698899
Translation factors [BR:pvir03012]
 Eukaryotic type
  Elongation factors
   120698899
Membrane trafficking [BR:pvir04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Other CMA associated proteins
    120698899
Exosome [BR:pvir04147]
 Exosomal proteins
  Proteins found in most exosomes
   120698899
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 FlpD FcpA AAA_22
Other DBs
NCBI-GeneID: 120698899
NCBI-ProteinID: XP_039838601
LinkDB
Position
3K:complement(30058286..30061564)
AA seq 447 aa
MGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK
VGYNPDKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD
VYKIGGIGTVPVGRVETGIIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNV
KNVAVKDLKRGYVASNSKDDPAKEAASFISQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF
AELITKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQT
VAVGVIKSVEKKDPTGAKVTKAAAKKK
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgggtaaggagaaatcccacatcaacatcgtggtcattggccacgtcgactccggcaag
tcgactaccaccggccacctgatctacaagcttggaggcatcgacaagcgtgtgatcgag
aggttcgagaaggaggctgcggagatgaacaagaggtccttcaagtacgcgtgggtgctt
gacaagctcaaggccgagcgtgagagaggtatcaccattgatatcgccctgtggaagttc
gagaccaccaagtactactgcacggtcattgatgcccctgggcaccgtgacttcatcaag
aacatgatcacgggtacatcccaggctgactgtgctgtccttatcattgactccaccact
ggtggttttgaggccggtatctccaaggatggccagacccgtgagcatgctctccttgct
ttcactcttggagtcaagcagatgatctgctgctgcaacaagatggatgccaccactccc
aagtactcgaaggcccgttatgatgagattgttaaggaagtctcctcctacctgaagaag
gttggctacaaccctgacaagattgccttcgtccccatctctggttttgagggtgacaac
atgattgagaggtccaccaaccttgactggtacaagggcccaaccctgcttgaggctctt
gaccagatcaacgagcccaagagaccttcggacaagcccttgcgtctcccccttcaggat
gtgtacaagattggtggtattggaactgtccctgttggccgtgttgagaccggtatcatc
aagcctggtatggttgttacctttggtcccagcggcctgactactgaggtgaagtcagtt
gaaatgcaccacgaggctctccaggaggcccttcctggtgacaatgttggcttcaatgtg
aagaatgttgctgtgaaggatctgaagcgtgggtatgtggcctccaactccaaggatgac
cctgccaaggaggctgcaagcttcatctcccaggtcatcatcatgaaccaccctgggcag
atcggcaatggctatgccccagtgctggactgccacacctcccacatcgctgtcaagttc
gctgagctcattaccaagatcgacaggcgatctggcaaggagcttgagaaggagcccaag
ttcctcaagaacggtgatgctggtatggttaagatggttcccaccaagcccatggtggtg
gagaccttctctgagtaccctccccttggtcgctttgctgtccgtgacatgaggcaaacg
gtcgctgttggagtcatcaagagtgtggagaagaaggaccctaccggcgccaaggtgacc
aaggctgctgccaagaagaaatga

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