Panicum virgatum (switchgrass): 120698901
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Entry
120698901 CDS
T07260
Name
(RefSeq) elongation factor 1-alpha-like
KO
K03231
elongation factor 1-alpha
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120698901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120698901
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120698901
03012 Translation factors [BR:
pvir03012
]
120698901
04131 Membrane trafficking [BR:
pvir04131
]
120698901
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120698901
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
120698901
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
120698901
Translation factors [BR:
pvir03012
]
Eukaryotic type
Elongation factors
120698901
Membrane trafficking [BR:
pvir04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
120698901
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120698901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
FlpD
SRPRB
AAA_22
Motif
Other DBs
NCBI-GeneID:
120698901
NCBI-ProteinID:
XP_039838604
LinkDB
All DBs
Position
3K:complement(30216352..30219359)
Genome browser
AA seq
447 aa
AA seq
DB search
MGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK
VGYNPDKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD
VYKIGGIGTVPVGRVETGIIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNV
KNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF
AELITKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQT
VAVGVIKSVEKKDPTGAKVTKAAAKKK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaggagaagtcccacatcaacatcgtggtcattggccacgtcgactctggcaag
tcaaccaccaccggccacctgatctacaagcttggaggcatcgacaagcgtgtgatcgag
aggttcgagaaggaggctgcggagatgaacaagaggtccttcaagtacgcgtgggtgctt
gacaagctcaaggccgagcgtgagagaggtatcaccattgatatcgccctgtggaagttc
gagaccaccaagtactactgcacggtcattgatgcccctggacaccgtgacttcatcaag
aacatgatcacgggtacctcccaggctgactgtgctgtccttatcattgactccaccact
ggtggttttgaggccggtatctccaaggatggccagacccgtgagcatgctctccttgct
ttcactcttggagtcaagcagatgatctgctgctgcaacaagatggatgccaccactccc
aagtactccaaggcccgttatgatgaaattgtgaaggaagtctcctcctacctcaagaag
gtcggctacaaccctgacaagatcgccttcgtccccatctctggttttgagggtgacaac
atgattgagaggtccacaaaccttgattggtacaagggcccaaccctgcttgaggctctg
gaccagatcaatgagcccaagagaccttcggacaagcccctgcgtctcccccttcaggat
gtgtacaagattggtggtattggaactgtccctgttggccgtgttgagaccggtatcatc
aagcctggtatggttgttacctttggtcccagcggcctgactactgaggtgaagtcagtt
gaaatgcaccacgaggctctccaggaggcccttcctggtgacaatgttggcttcaacgtg
aagaacgttgctgtgaaggatctgaagcgtgggtatgtggcctccaactccaaggatgac
cctgctaaggaggctgcaagcttcacctcccaggtcatcatcatgaaccaccctgggcag
atcggcaatggctatgccccagtgctggactgccacacctcccacatcgctgtcaagttc
gctgagctcattaccaagatcgacaggcgatctggtaaggagcttgagaaggagcccaag
ttcctcaagaacggtgacgccggaatggtcaagatggttcccaccaagcccatggtggtg
gaaaccttctctgagtaccctcctcttggtcgctttgctgtccgtgacatgaggcaaacg
gtcgctgtgggagtcatcaagagtgtggagaagaaggaccccaccggcgccaaggtgacc
aaggctgctgccaagaagaaatga
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