Panicum virgatum (switchgrass): 120699106
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Entry
120699106 CDS
T07260
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120699106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120699106
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120699106
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120699106
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120699106
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120699106
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120699106
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120699106
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120699106
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120699106
Exosomal proteins of other body fluids (saliva and urine)
120699106
Exosomal proteins of breast cancer cells
120699106
Exosomal proteins of colorectal cancer cells
120699106
Exosomal proteins of bladder cancer cells
120699106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
MatP_C
Motif
Other DBs
NCBI-GeneID:
120699106
NCBI-ProteinID:
XP_039838907
LinkDB
All DBs
Position
3K:complement(35914644..35919058)
Genome browser
AA seq
574 aa
AA seq
DB search
MASANAISTASLLRPLSQGRARRARNGRFVVRADAKDIAFDQKSRAALQAGVEKLANAVG
VTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELYDPMENAGAALIREVASKTNDSAGDGT
TTASVLAREIIKLGLLSVTSGANPVSLKKGIDKTVQGLIQELENKARPVKGGGDIKAVAS
ISAGNDEFIGSMIAEAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLE
KSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLVVNKLRG
ILNVAAIKAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKVTIHQTT
TTLIADAASKDEIQARVAQLKKELAETDSIYDTEKLAERIAKLAGGVAVIKVGAATETEL
EDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSNIVPSIKEKIEDPDERLGADIIQKAL
VAPASLIAHNAGVEGEVVVEKVKESEWEVGYNAMTDKYENLIESGVIDPAKVTRCALQNA
ASVAGMVLTTQAIVVEKPKPKPQVAEPAEGTLTV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccaacgccatctccaccgcctctctcctccggcccctctctcagggcagg
gcgaggagggccaggaacggccggttcgtggtccgtgccgacgccaaggacatcgccttc
gaccagaagtccagagcggcactccaggccggcgtcgagaagctcgctaacgccgtcggt
gtcaccctcgggccccgaggaaggaatgtagttctggatgagtatggcagccccaaagtt
gtaaatgatggagtgactattgcccgggctattgagctgtatgatccaatggaaaatgct
ggtgcagcactaatccgtgaggttgctagcaagaccaatgattctgctggtgatggtact
acaactgcttctgtccttgctcgtgaaatcatcaagctaggccttctgagtgtaacgtct
ggtgcaaaccctgtgtcacttaagaagggaattgacaaaactgtgcagggtctaattcag
gagcttgagaataaggccagaccagtcaagggtggtggtgatatcaaagctgttgcgtct
atctctgctggcaatgatgaattcattggatccatgattgccgaagcaattgataaagtg
ggccctgatggtgtcctatcaattgaatcttcatcatcttttgagactactgttgatgtt
gaagaaggaatggagattgaccgtggatatatttcccctcaatttgttaccaacctcgag
aaatctattgtggagtttgagaatgctaaggttcttattactgatcagaagatcacaagc
ataaaggaaatccttccaattttggagaagaccacacagctgagagccccactgttcatt
atcgctgaggacattactggtgaagctttggcaactcttgttgttaacaaacttcgagga
atccttaacgttgcagcaattaaggccccaagctttggtgagcggcggaaggctgtcctt
caggacattgccattgtcacaggtgctgagttcctagcaaaagatcttggtttgttggtt
gaaaatgctacagaggaacaacttgggacagcaaggaaagtcacgatacatcagaccaca
accaccctgatagcagatgcagccagtaaagatgagatccaagcgagggttgcacagcta
aagaaggagcttgctgaaactgattcgatttatgatactgagaaattggctgagagaatt
gcgaaacttgctggtggtgttgctgttatcaaggttggagctgcaaccgaaactgagctt
gaggaccgccagctacgaattgaggatgcaaagaatgctacttttgctgcaatcgaggag
ggcattgttcctggaggtggtacggcatatgtgcacctatccaacattgtcccctcgatc
aaggaaaaaattgaggatcctgatgagcgccttggtgctgacattattcaaaaggcattg
gtggcacctgcttcactgattgcgcacaatgctggagtggagggtgaagtggttgttgag
aaggtcaaggagagtgagtgggaagtgggttacaatgcaatgacggacaagtatgagaac
ctgattgagtccggtgtgatcgaccctgccaaggttactaggtgtgcgctccagaatgca
gcctcagtggcagggatggtcctaaccacacaggccattgttgttgagaagccgaagccg
aagcctcaagttgctgagcccgcagagggcacccttactgtgtaa
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