KEGG   Panicum virgatum (switchgrass): 120699164
Entry
120699164         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNFT1-like
  KO
K28516  E3 ubiquitin-protein ligase RNFT2
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120699164
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120699164
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-RING_5 zf-rbx1 Prok-RING_4 zf-RING_6 zf-C3HC4_4 zf-RING_16 zf-ANAPC11 zf-C3H2C3 DUF1451 zf-Nse Caps_synth_CapC zf-RING_10
Other DBs
NCBI-GeneID: 120699164
NCBI-ProteinID: XP_039838983
LinkDB
Position
3K:38674384..38681163
AA seq 451 aa
MDSPARADRRGNGPGAGAAPSGLRRYGLNFSASSLLHAPLAALLEYSGVVPSSPTPQEPH
HPSAAPSSPSSASEVDGLLSSAATGDGEVSIRIQGGPGDSEAAGGAAAGTSSEDTIEATT
GSEVDQASAAGRGADAVDAEANGGGGASGNGGGDRAYQRYDVHHVARWIEQILPFSLLLL
VVFIRQHLQGFFVTIWIAAVMFKSNDILRKQTALKGERKISLLIGITVIFTIHVFGVYWW
YRNDDILRPLFMLPPKDIPPFWHAIFIIMVNDTMVRQAAMAVKCMLLMYYKNCRGRNYRR
QGQMLTLVEYILLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQSF
LAAAKALSRKDVHYGSYATAEQVLAAGDMCAICQEKMHVPVLLRCKHIFCEDCVSEWFER
ERTCPLCRALVKPADIRSFGDGSTSLFFQLF
NT seq 1356 nt   +upstreamnt  +downstreamnt
atggactcgccggcgagggcagatcgcaggggcaacggaccgggcgctggcgccgcaccc
tccgggcttcgccgctacggcctcaacttctccgcttccagcctcctccacgcccccctc
gcggcgctcctcgagtactccggcgtcgtcccttccagccccaccccgcaggagccgcac
cacccgtccgcggcgccctcttcgccgtcgtcggcgtccgaagtcgacggtctcctctcc
tccgcggccaccggagacggggaggtctcgatccggatccagggcggtccgggcgactcg
gaggccgcgggcggggcggccgcgggaacctcgtccgaggacacgatcgaggcgacaacc
ggctcggaggttgaccaggcgtccgccgccgggaggggagcagacgctgtggacgcggag
gctaacggcggtgggggcgcatcggggaacgggggcggggaccgcgcgtaccagcggtac
gacgtgcaccacgtggcgcggtggatcgagcagatattgccgttctcgctgctcctgctc
gtcgtcttcattcggcagcatctccaaggtttctttgtcacaatttggattgctgctgta
atgttcaagtcaaatgatatactgaggaagcaaactgctttgaagggcgagagaaagata
tctttactcattgggattacagtaatcttcacgattcatgtgtttggtgtctattggtgg
tacaggaatgatgatattctcagacctttgttcatgcttcctccaaaagatataccacca
ttctggcatgcaatttttatcatcatggtcaatgatacaatggttcgccaagccgcaatg
gctgtcaagtgcatgctacttatgtactacaagaactgcagaggtcgtaactaccgtagg
cagggccaaatgctaacccttgtggagtacattctgcttctttatcgtgccttgttgcca
actcctgtttggtaccggttctttctgaataaggaatatgggagtctcttctcatcttta
accaccgggctgtacctgactttcaagttgacttcagtagttgagaaggtccagtcattc
ttggcggcagcgaaagcactgtcacgtaaagatgtgcattatgggtcttatgccactgca
gaacaggtacttgctgctggtgatatgtgtgctatctgccaggagaagatgcatgtgcct
gttctccttcgctgtaaacatattttctgtgaagactgtgtttcagaatggtttgagcga
gaacggacttgccccttgtgtagagcactggtaaaacctgctgatattcggtcatttggt
gatggttctacaagtctattcttccagttgttttag

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