Panicum virgatum (switchgrass): 120699204
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Entry
120699204 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ZNF598-like isoform X1
KO
K22381
E3 ubiquitin-protein ligase ZNF598 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120699204
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120699204
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120699204
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH_ZNF598
zf-C2H2_13
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120699204
NCBI-ProteinID:
XP_039839043
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All DBs
Position
3K:41991115..41996925
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AA seq
847 aa
AA seq
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MDDSCAVCAETLEWVAYGPCGHRDVCSTCVVRLRFVMDDKKCCICKTVCPSVFVTKALGE
YTRVVNDFSVFPTGVNEGKSGDFWYHEDSQAYFDDADHYKMIRAMCRLSCSVCDNAEDQV
ALAPQAKRRSKFRSIDQLKGHLFHVHRLHMCNLCLEGRKVFICEQKLYSRSQLTQHMKTG
DSEVDGSEVERSGFAGHPMCEFCKSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRN
YDDLELHFRKDHFLCEDEACLAKKFVVFPSEAELKRHNAMEHGGRMSRAQRNAALQIPTS
FIYRRNEQDQQRGRGRGRTAHHDGTESYILSSGQNGRATTNNGHVGRVENVSGSLQSLSV
GSSSGGAEVGSRTARVLEQLSFPPLSDPDIPDTRVDSVPDEISFPSLSEQQSRYALALNQ
SARGAARLGDESLFPPLPGSSNNRGPASAQQGLQSLAKSTLAARLQQRSKGPVKVLNTAR
PRPSENPELLPSSTQTWPTPDQGLLLPGSSQLRIGTQATRENGFMPAASSNSAWNPVAPN
KIKHSVSTPNLVSGGSSGQASSSTAYGSNRSQEQPQGSQALPVAEDVRAANKSLVERMRS
ALGMDEDRYSAFKEIAGEYRQGIIDTSEYLSYVEQFGLSHLVPEMSRLLPDPQKQRELAD
AYYTNIRFKSLQENGGGGTSSQEASCKRKGKGKVPVTESGGTTDVKYALADNFLDTVRRL
QSNHQAQEGEAEVLSKDGYRPSKGVQLSAGSSSSLDSDTGFNSKASGARDNAGKGGNSSS
NKQPKKTSKFLRARLGDNSLATLDLSRPSASPEGPERESQGPQMGLPVRGAWKNGGGQKL
FSSNGRK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcctgcgcggtgtgcgcggaaactctggagtgggtggcctacgggccgtgc
gggcaccgcgatgtgtgctccacttgcgtcgtccgcctccgtttcgtcatggacgacaag
aagtgctgcatctgcaagaccgtctgcccctccgtcttcgtcaccaaggccttgggtgaa
tatacgagagtggtcaatgatttctctgtgtttcccactggggtaaacgagggcaagtca
ggggatttctggtaccatgaggattcacaggcatacttcgacgacgcggaccactacaag
atgatacgagcaatgtgccggctttcttgtagtgtttgtgacaatgcagaggatcaggtt
gctcttgctcctcaagcaaagcgcagaagtaagttcaggagcatcgatcaactgaaggga
catttgttccatgtgcataggttgcacatgtgcaatctttgcttggaggggaggaaggtg
ttcatttgtgagcaaaagctttattcaaggtcccagttaactcagcatatgaaaactggt
gactctgaagtggatggctctgaggtagagcgtagtggttttgctgggcatccgatgtgt
gagttctgcaaaagttcattttatggagataatgagctttacacacatatgtctagagaa
cactattcttgccacatatgccaacggcagcatcctgggcagtatgactattttcggaac
tatgatgaccttgagttgcattttcggaaagatcatttcctctgtgaagatgaagcatgt
ttggcaaagaagtttgttgtcttcccgagtgaagcggagctcaagagacataatgcaatg
gagcacggtgggcggatgtctcgtgctcagaggaatgctgcacttcagatacctaccagt
tttatatatcgcagaaatgagcaagaccaacagcgtggcagaggtagggggcgtactgct
caccatgatggaactgagagttatatcttatcatcgggacagaatggccgtgcaaccact
aacaatggccatgtgggccgtgttgagaatgtttcagggtctttacagtcattaagtgtt
ggttctagctctggaggagcagaagttggttcaaggactgcacgagtacttgaacagttg
tcctttccacctctttctgacccagatattcctgatactagagttgactctgttcctgat
gaaatctcatttccttcattgtcagagcagcaatccagatatgctcttgctctcaatcag
agtgcaagaggtgctgcgaggttgggggatgagtcattattccctcctttgcctgggtct
agtaacaacaggggtcctgcttcagcacaacaggggctacaaagtctagccaagagcaca
cttgcggcaaggcttcaacaacgtagcaagggccccgtgaaagtacttaatactgctcgg
cctcggccctctgagaatcctgaattgctccctagttccacccagacatggcctacacct
gatcaggggctgctcctgcctggatcttcccagcttcgaattggaactcaagcaacaaga
gaaaatgggttcatgccagctgcctccagtaactcagcttggaatcctgttgctccaaac
aagataaagcattctgtttccacacctaatcttgtgtctggtggctcctctggccaagca
tcatcaagtacagcttatggtagcaatagaagtcaagaacagcctcaaggtagccaagct
ttgcctgttgctgaggatgttcgtgctgcaaacaaatctcttgttgaaagaatgcgttct
gctctgggaatggatgaggacaggtactctgcattcaaagagattgctggtgaataccgt
caaggtatcatagatacttcagagtatctttcgtatgtcgagcagtttggactttcgcac
cttgttcctgaaatgtctaggctcttaccggatcctcaaaagcagagggaacttgctgat
gcatattatacaaacatacggtttaaaagccttcaagaaaatggtggaggtgggaccagc
tcacaagaggccagctgtaaaaggaaggggaagggaaaagttcctgttacggaaagcggt
ggtactacggatgtgaaatatgcactagcagataactttctggacactgtaagaaggctt
caatcaaaccaccaggctcaggaaggagaggctgaggtgttgtcaaaggatgggtatcga
ccttccaagggggtccaactatcagctggatcttcatctagtcttgacagtgatactggt
ttcaattcaaaagcttctggtgccagagataatgctggcaaaggaggcaatagcagcagt
aataagcaaccaaagaagacatcaaagtttctcagagctcgtttaggtgacaactcatta
gccacacttgatttaagtcgtcctagtgcgagtcctgaaggacctgaaagagaatcacaa
ggcccacagatggggttgcctgttcgaggtgcttggaagaatggtggagggcagaaactc
ttttcgagcaacggaaggaagtag
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