Panicum virgatum (switchgrass): 120699214
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Entry
120699214 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120699214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120699214
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120699214
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120699214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_16
Cas3-like_C_2
AAA_30
nSTAND3
TsaE
Sigma54_activ_2
GIPC1_GH2
Flavi_DEAD
ABC_tran
PhoH
SLFN-g3_helicase
T2SSE
Motif
Other DBs
NCBI-GeneID:
120699214
NCBI-ProteinID:
XP_039839057
LinkDB
All DBs
Position
1K:20705995..20710985
Genome browser
AA seq
1215 aa
AA seq
DB search
MAPAAAAAAGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDSATVAEF
DARLKEKGADFPDYFVRTLLTIIHAILPPSSNPSSAAVAAGPAGAEASKFPGLARPDDPD
HARNLRLELERDADVAAPAPSRDDRDRRRDGRGRDRDYDRGGRDRDRDRGGHDRDRDRGG
DRGGRDRDRGRDRDYARDRDRDRVGDQYRDRDRGRDRDMERDIDRDWGRSRRYEEEDRGV
GGRGREVAASNPSGEPELYQVYRGRVTRVMDTGCFVRLEDVRGGREGLVHVSQMVSRRVA
NAKELVKRDQEVYVKVVSVKGQKLSLSMRDVDQDTGKDLLPMQRGVDDAPRANPSGGGGG
AMGSGKRLGLSGIVIKEEDESAPTSRRPLKRMSSPERWEAKQLIASGVLDVRDYPMFDED
GDGMMYQEEGAEEELEIELNEDEPAFLQGQSRFSIDMSPVKIFKNPEGSLSRAAALQTAL
IKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLAQELRGVGLSAYDMPEWKKEA
YGKALTFGQRSKLSLQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLA
EAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTD
GMLLREILVDENLSQYSVIMLDEAHERTMHTDVLFGLLKQLIKRRSDMRLIVTSATLDAE
KFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQ
EEIDHACQCLYERMKGLGKDVPELIILPVYSALPSEMQSKIFDPAPPGKRKVVVATNIAE
ASLTIDGIYYVVDPGFAKINVYNSKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLY
TESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGINDLLSFDFMDPPAPQALISAMEQLYS
LDALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPRE
KQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLL
TIMDRYKLDIVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQ
RQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFYKGADPTKMSKRKRQERIEPLYD
RYHEPNSWRLSKRRA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcggcggcggcggcggcggggcccggcgacgacggtctccgaaagctggag
tacctctccctcgtctcgaaggtatgctccgagctcgagacccacatcggcgtcggcgac
aaggtgctggccgagttcatcacggagctcggccgcgactccgccaccgtcgccgagttc
gacgcccggctcaaggagaagggagccgacttccccgactacttcgtccgcacgctcctc
accatcatccacgccattctcccgccctcctccaaccctagctccgccgccgtcgccgcg
ggccccgccggtgcagaggcgtccaagttccccgggctcgcccgccccgacgaccccgac
cacgcccgcaacctccgcctcgagctcgagcgggacgccgatgtggccgcccccgccccc
tccagggatgaccgtgaccgccgccgcgacgggagaggccgtgaccgggactacgaccgc
ggcggccgtgaccgcgaccgtgaccgcggcggccatgaccgcgaccgtgaccgcggcggt
gatcgcggcggcagggacagggatcgaggccgtgaccgtgattatgcccgtgacagggac
cgagaccgtgttggggatcagtatcgggaccgagacaggggaagggacagagacatggag
agggatatagatagagattgggggaggagcaggaggtatgaagaggaggacagaggtgtt
gggggaagggggagggaggttgctgcttcgaatcccagtggcgagccagagctctaccag
gtttaccgagggagggtgacccgggtaatggacactgggtgctttgtcaggcttgaggat
gtgcgcggtggccgcgagggacttgtgcatgtctcacagatggtgagcaggcgggtggcc
aatgcgaaggagttagtgaagcgtgaccaggaggtgtatgttaaggtagtatcagtgaag
gggcagaagttgagtttgtcaatgcgggatgtggaccaggatacagggaaggacctcttg
ccaatgcagcgtggtgtagatgacgcgccaagggcgaacccatcgggtggcggtggcggt
gccatggggtctggcaagaggttgggtctgtcgggcattgtgatcaaggaggaggatgag
tccgcgccaacatcacggcggccgctcaagcgtatgagctctccggagagatgggaggca
aagcagctgattgcttcgggtgttctggatgtgagggattacccaatgtttgatgaggat
ggtgatggcatgatgtaccaggaggaaggtgcagaggaagagcttgaaatcgagcttaat
gaggatgaaccagcattcttgcagggacagagcagattttcaattgatatgtcacctgta
aagatattcaagaatcctgagggttcgctgagccgagctgcggccctgcagactgccctg
ataaaggaacgtcgtgaggtccgagagcaggagcagagagccatgttggattcgatcccc
aaggatctgaatcgaccatgggaggaccctatgcctgatacaggtgagcggcaccttgca
caggagctgaggggtgttggcctttcagcttatgacatgccagagtggaagaaggaggca
tatggaaaggctttaacttttggtcaaaggtcaaagctttcattacaagagcagaggcag
tctcttcctatctacaagttgaagaaggagcttatacaagctgtacatgacaatcaagtt
ctggttgttattggagagacaggttctgggaagacaacacaggtgacacaatatttggct
gaggcaggttataccaccaggggtaaaattgggtgcactcagcctcggagggttgcggca
atgtctgttgcaaagagagtggcagaagaatttgggtgccggttgggagaggaagttggc
tatgccatccgttttgaggattgtactgggccagacacagttataaaatacatgactgat
ggtatgcttctgcgtgagattcttgttgatgagaatctttcccaatattctgttatcatg
ctcgatgaagcccatgaaaggaccatgcacacagatgtgctctttggtttgctgaaacaa
cttattaagcgcagatctgacatgaggcttattgttacttcagccacccttgatgctgag
aagttctcaggatatttctttaattgtaacatcttcacaattcctggaagaacattccca
gtggagatactctacacaaaacaacctgagagtgattacttggatgctgcattgattact
gttctgcagattcatttgacagagccagaaggagacatccttcttttcttgacaggacag
gaggagattgaccacgcctgccaatgtctgtatgagaggatgaaggggttaggcaaggat
gttccagagctcataattttgcctgtgtatagcgcccttcctagtgagatgcaatcaaag
atctttgacccagctccgcctggcaaaaggaaagttgttgtggccaccaatattgctgaa
gcttctttgacaatcgatggcatatactatgttgtggatcctggttttgccaagatcaat
gtgtacaattcaaaacaggggcttgactcattggttatcactccaatctcgcaagcatct
gcgaaacagagagcagggcgtgctgggcgtactggacctggcaagtgttatcgtctatac
accgaaagtgcctaccgtaatgaaatgtcccccacgaccattccagaaattcagaggatc
aacttggggtctacagtacttaatatgaaggcaatgggtataaatgacctattatccttt
gattttatggaccccccagcacctcaagcactgatttctgccatggaacagttgtatagc
cttgacgctcttgatgaagagggccttctaaccaaactggggaggaaaatggcagaattc
ccattggacccaccactttcaaagatgctactagccagtgttgaccttgggtgcagtgat
gagatactgactatcatagcaatgattcaaacagggaacatattctacaggccacgagaa
aaacaggctcaagctgatcaaaaaagggctaaatttttccagccagagggggatcatctt
actctgcttgctgtatacgaggcttggaaggcaaagaacttttctggtccctggtgtttt
gagaactttgttcaatcaagatcattgaggagagcacaggatgtgaggaagcaacttctc
actatcatggacagatataaacttgatattgtctctgctgggaaaaacttcacaaagata
aggaaagcaattaccgctggcttctttttccatgctgcaaggaaggatccccaagaagga
tacagaaccttggttgaaaaccagccagtgtacatccaccccagcagcgctttgttccag
cggcagccagactgggtcatctatcacgagctcgtgatgacgaccaaggagtacatgagg
gaggtgactgtgattgatccgaaatggcttgttgagcttgcgccaaggttttacaagggt
gcagaccccaccaagatgagcaaaaggaaaaggcaggagagaattgaacccctgtacgat
agataccacgagcccaactcttggcgccttagcaagcgccgagcttga
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integrated database retrieval system
