Panicum virgatum (switchgrass): 120699238
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Entry
120699238 CDS
T07260
Name
(RefSeq) probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1
KO
K05356
all-trans-nonaprenyl-diphosphate synthase [EC:
2.5.1.84
2.5.1.85
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120699238
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120699238
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.84 all-trans-nonaprenyl diphosphate synthase [geranyl-diphosphate specific]
120699238
2.5.1.85 all-trans-nonaprenyl diphosphate synthase [geranylgeranyl-diphosphate specific]
120699238
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120699238
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Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
HEPPP_synt_1
Motif
Other DBs
NCBI-GeneID:
120699238
NCBI-ProteinID:
XP_039839087
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Position
3K:43309584..43313813
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AA seq
400 aa
AA seq
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MAAPSSSLASTSHLSRRATAAVGPCSTRRQLRIRCCWAGGRVASRWRAPGVCFVVSPSQP
GLAAVDVPAATMSERTSVSSLLEVVSDDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGK
RLRPALVFLVSRATAELAGLSELSTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETI
HQLYGTRVAVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDIT
LDDYLLKSYYKTASLIAASTRSAAIFSGVSTAVCEQMYEYGRNLGLSFQVVDDILDFTQS
AEQLGKPAGSDLAKGNLTAPVIFALQDEPELREIIDSEFSETDSLAAAIDLVHRSGGIRR
AHELAREKGDLAIQNLQCLPRSDFQSTLEKMVKYNLERIE
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgtcgtcctccctcgcctccacctcccacctctcccgccgcgccacggcc
gcggtcggcccgtgctccacccgccgccagctgcgcatccggtgctgctgggccggcggc
agggtggcgtccaggtggcgcgcgccaggtgtttgcttcgtggtctcacccagccagcca
ggtcttgctgcggtcgacgtgccggcggcgaccatgtccgagcgtacttcggtgtcctca
cttttggaggttgtctcggacgatttgctgaagcttaacaacaatctcaaatcgcttgtt
ggtgcagaaaatccagttttggtttctgcggctgaacaaatttttggtgccggtgggaag
agattaagaccagcattagtttttctggtgtctagagcaactgctgaattagctggtttg
tcggagctaagtacagaacatcaacgcttagcagagattattgagatgattcacactgca
agtttaatacatgatgatgtcatagatgatagtgggatgcgaagagggaaggaaactatt
catcagctatatggtacacgggtggctgtacttgctggtgattttatgtttgcacagtct
tcttggttccttgcaaacctagaaaacattgaagttataaagctgatcagtcaggtaatc
aaggactttgcaagtggtgagataaaacaagcatccactctgtttgactgtgacatcacc
cttgacgattaccttctcaagagctactacaaaactgcatctctgatagcagcaagcaca
aggtcagccgccatattcagtggcgtcagcaccgcagtttgtgaacaaatgtatgaatat
ggcaggaatcttggcctctccttccaggtagtcgatgacatcctggacttcacccaatca
gctgagcaacttggcaaaccagcaggaagtgacttggcaaagggaaacctgacagctccg
gtcatcttcgctttgcaagatgaaccagagctgagggagatcatcgattctgagttcagt
gagacagattcgttagctgctgcaatagaccttgttcatagaagtggtggaataaggagg
gcacatgagcttgcaagagagaagggtgacttggccatccaaaatctgcagtgccttccg
agaagcgacttccaaagtacccttgagaagatggtgaaatataatcttgaaaggattgag
tag
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