Panicum virgatum (switchgrass): 120699313
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Entry
120699313 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120699313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120699313
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120699313
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120699313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
AAA_16
ABC_tran
SLFN-g3_helicase
ATPase_2
Helicase_RecD
nSTAND3
Flavi_DEAD
T2SSE
AAA_29
Dynamin_N
AAA_33
FtsK_SpoIIIE
Cas3-like_C_2
PhoH
Motif
Other DBs
NCBI-GeneID:
120699313
NCBI-ProteinID:
XP_039839212
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All DBs
Position
3K:44926440..44956486
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AA seq
705 aa
AA seq
DB search
MPSPSPPPAPPVLPISEHEDEIVAAVDANPVVVVIGETGSGKSTQLSQILHRRGYTRRGA
IAVTQPRRVAAVSVSRRVAQELGVPLGDEVGYAIRFEDRTSERTCIKYLTDGVLLRESLS
NPELKQYSVIILDEAHERSLNTDILLGLMKRLITERASDLKVLITSATLDGLKVSKFFSG
CPVLNIPGTLFPVEKFYSTERPTNYIESSLRTAIDIHAKEPPGDVLIFMTGKDDIDKMVS
KLEERIQNLEEGSCMDALVLPLHGSLPPELQVRVFAPAPPNCRRFIVATNVAETSLTVDR
VVFVIDCGYVKQRQYNPSSGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPMSVYEK
EFLEATVPEIQRSSLAGSVLYLKSLNLPDINILKFDFLDPPSRESLEDALRQLYLIDAID
ENGQITEVGRIMAELPLEPSLSRTLIEANELGCLSQALSVAAILSAEITLRSTRSKDVGG
KRKKQELPDGSGWGDHIQLLQIFESWDQSGYDPKWCSDHDLQVRGMKLSKDVRNQLCQII
QKIAKGPTDVHARKSRKNDPDYRKLRRALCVGYGNQLAERMLHHNGYHTVGYRAQLVQVH
PSSVLEGDEYGKFPMYVVYHELISTTRPYMRNICAVDQAWVEPILKKLQKLDVNQISGGS
SEPKDSEPQDKHVNVPKKAVDVQQSEVDSKIQAARQRYLARKGKK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgccgtcaccgcctccggcgccgccggtgctgccgatatcggagcacgaggac
gagattgtcgccgcggtggacgcgaacccggtggttgtggtcatcggagagaccggctct
ggcaagagcacccagctctctcagatcctccaccgccgcggatacacccgccggggtgcc
atcgccgtcacccaaccccgccgcgtcgccgccgtctccgtttccagaagagtagctcag
gagcttggtgtcccactcggggatgaagttggttatgcaattcgatttgaggatagaact
tcagagagaacatgcataaaatacctcacggatggcgttcttcttcgcgaaagcctttca
aatcctgaattgaagcaatactcagtgatcatactggatgaagctcatgagcgtagtttg
aacactgatatccttttaggtttgatgaaaagattgatcacagaaagagcttcagattta
aaagttctgatcacctctgcgactcttgatggtttaaaagtttcaaagttcttctcagga
tgccctgtgttaaacattcctggaactctattccctgtggagaaattttatagcactgag
cgcccaacaaattatatagaatcttcacttagaacagccatagatatccatgccaaggaa
cccccaggggatgtcttaatatttatgacaggaaaggatgatattgacaagatggtctca
aaattggaggagagaattcaaaatcttgaggaaggctcctgtatggatgctcttgtcctt
cctctccatggttctttgccacctgaactgcaggttagggtatttgctccagcacctcca
aactgtcgacgcttcattgttgcaacaaatgttgctgaaacttctctgactgtagatcgt
gtcgtatttgtgattgattgtggttatgtaaagcaacgccagtataatccatcaagtgga
atgtattcacttgatgtagttcagatcagcagagtgcaggctgatcagcgagcagggcga
gctggaagaactcggcccggcaagtgttataggctatatccaatgtctgtatatgaaaag
gagtttcttgaggctacagttcctgaaattcaacgctcttctcttgctggaagtgttctg
tatctgaaatcgttaaatcttccggacatcaacatcttgaagtttgattttctagatcca
ccgtcacgtgagtccttagaagatgctttgaggcaattatacctcattgatgcaattgat
gaaaatgggcaaataacagaagttggacgcattatggcagaactcccactggagccttct
ctttcaaggactttgattgaagcgaatgaattgggatgtttgtctcaggcattatctgtt
gctgcgattttgtcagcagaaatcacattgcgatcaactagaagcaaggatgtgggggga
aagaggaaaaaacaagagcttcctgatggttctggctggggtgaccatatacaattgctt
cagatattcgaaagttgggaccaatcaggatatgatccaaaatggtgctctgatcatgat
ttgcaggtgcggggtatgaaattgagcaaagatgtgaggaaccaactatgtcagattatt
caaaaaattgcaaaaggtccaactgatgttcatgcaaggaaaagccggaagaatgaccct
gactatagaaagttgaggagagctctctgtgtaggatatggtaaccagctagctgagagg
atgctgcatcacaatgggtaccatactgttggctatagggcccaacttgtgcaggtgcat
ccatcttctgtactggaaggtgacgaatacgggaagtttccgatgtatgttgtttatcat
gagctgataagtacaactcgtccatacatgagaaacatttgtgctgtggaccaggcctgg
gttgagcctatattgaagaagcttcagaaattagatgtaaaccaaataagtggtggttca
agtgaaccgaaagattctgaacctcaagataaacatgtaaacgtgccaaagaaagctgtt
gatgttcaacaatctgaggtggacagtaaaatccaggcagctcggcagcgctaccttgca
cgaaaaggcaagaaatga
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