Panicum virgatum (switchgrass): 120699430
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Entry
120699430 CDS
T07260
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120699430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120699430
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120699430
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
120699430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_RING
Sina_ZnF
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-RING_10
zf-RING_14
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
120699430
NCBI-ProteinID:
XP_039839353
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Position
3K:complement(48800068..48840073)
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AA seq
324 aa
AA seq
DB search
MAKFSFDDADDDPPAAAASGSEKRKREDSGPDEAGGGGGPPKARIFADRGGGPEGGAVVG
AERAVGSGRKAVETVFDGEADGISVRIDPDVLDCSICFEPLRPPLYQCQNGHVACFSCWS
RLTNKCHICSNEANFTRNIALEKVVESVKSACSYAKWGCSKLVSYSLRNAHEESCLFAPS
KCPIPGCGYRGFTGWWSGHFHTNHNNDSVRFSYGQCFEVTSKISVPFLVLLSEDDHLFLL
HNKNVMPYGHALSVGCLRTGSLNWNFFYEMKATSEGNTENSLQLKASVTNIVQLHPTEAF
LLVPYAFCKSGKLTLLVSIERGGC
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggccaagttctccttcgacgacgccgacgacgaccctcccgccgccgccgcttccggg
agcgagaagaggaagcgcgaggacagcggcccagacgaggccggcggcggcgggggaccc
ccgaaggcccgaattttcgccgaccggggcggagggccggagggaggcgcggtggtgggg
gcggagagggcggtagggagcggccggaaggcggtggagacggtctttgacggggaggcc
gatgggattagtgtgcggatcgaccctgatgtgcttgattgctccatctgcttcgagccc
ctccgaccgcccctctaccagtgccaaaatggccatgtagcatgcttttcctgctggtcc
aggctcaccaacaagtgtcacatttgttctaatgaagctaacttcacacgaaacatcgca
ctggagaaggttgttgagtcagtcaagtccgcctgctcatatgccaaatggggctgtagc
aagttggtcagttattcacttagaaatgctcatgaagaatcttgcctttttgctccttcg
aagtgtcctattcctggttgtggctacagaggattcaccggatggtggtcaggacatttc
catacaaaccataataatgatagcgtacggttctcatatggccagtgtttcgaagtgact
tcgaaaatatcagttccttttctagttcttctatccgaggatgatcacctattccttctc
cacaacaagaatgtgatgccctacggacatgcgctttcagttggttgccttaggactggc
agtctgaactggaatttcttctatgaaatgaaagcaacttctgagggaaacactgaaaac
agcctgcaattgaaggcttctgtcactaacattgtacagctccaccctaccgaagctttc
cttttagttccttatgccttctgcaaatctggcaaactaacactattggtctccattgag
agagggggttgctga
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