Panicum virgatum (switchgrass): 120699432
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Entry
120699432 CDS
T07260
Name
(RefSeq) ABC transporter F family member 1
KO
K06185
ATP-binding cassette, subfamily F, member 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120699432
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120699432
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_tran_Xtn
AAA_21
SMC_N
AAA_29
AAA_23
MMR_HSR1
AAA_22
AAA_28
RsgA_GTPase
AAA_24
AAA_15
AAA_30
Motif
Other DBs
NCBI-GeneID:
120699432
NCBI-ProteinID:
XP_039839363
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Position
3K:complement(48905142..48908824)
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AA seq
596 aa
AA seq
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MVSEASKKKAAQKKAAAAAKRGGKAAAAASSSSSSSSAAVDKATNGVAALKLSDRTCTGV
LASHPLSRDIHIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCREL
PIPEHMDIYHLSHEIEASDMSALQAVVSCDEERVKLEKEAEILAAQDDGGGEALDRVYER
LDAMDAATAEKRAAEILFGLGFTKQMQAKKTKDFSGGWRMRIALARALFMNPTILLLDEP
TNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQ
TRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKV
VRDRVLVFRFTDVGKLPPPVLQFVEVKFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGK
STLLKLMTGDLVPLDGMVRRHNHLRIAQYHQHLAEKLDLDMSALAYMMKEYPGTEEEKMR
AAVGRFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAE
ALNEWDGGLVLVSHDFRLINQVAQEIWVCENQAVTRWEGDIMDFKAHLKSKAGLSD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcggaggctagcaagaagaaggccgcccagaagaaggccgccgcggccgccaag
aggggaggcaaggctgctgcggcggcgtcctcgtcctcgtcctcttcctcggcggccgtg
gacaaggcgacgaacggcgtcgcggccctcaagctctccgaccgcacctgcaccggggtc
ctcgcgtcccacccgctctcccgcgatatccacatagagtctctttcattaacattccat
gggcatgaccttattgtggattctgagctggagctgaactatgggaggcgatatgggttg
cttggcttgaatggctgtggaaaatctactcttctcacagcaataggctgcagagaactt
cctatccctgaacacatggacatataccatctcagccatgagattgaggcttcagacatg
tctgcactacaagctgttgttagttgtgatgaggaaagagtgaagttagaaaaggaagct
gaaattttggctgcacaggatgatggtggtggtgaagctttggatcgtgtgtatgagcgt
ctagatgcgatggatgctgcaactgcagaaaagcgtgctgctgaaatattatttggtttg
ggttttaccaaacagatgcaggcaaagaaaactaaagatttctctggtggttggcgtatg
agaattgctttggcaagggcactgttcatgaatccaacaatccttttgcttgatgagccc
acaaaccatcttgatcttgaggcctgtgtctggttggaagagacactaaagaaatttgac
cgcatacttgttgtcatatcgcactctcaagattttctaaatggagtgtgcacaaacatt
atccatatgcaaaacaagaagcttaagttatacactggtaattatgatcagtatgttcaa
acccgctctgagcttgaagagaatcaaatgaagcagtataaatgggagcaggaacagatt
gcttcaatgaaggagtacattgcccgttttggtcatggttccgcgaagcttgcacgtcag
gcacaaagcaaagagaaaactcttgcaaagatggagcgtggtggtctaactgagaaggtt
gttagggatagagtacttgtgttccgctttacagatgttggcaagcttccaccaccagtg
ctgcagtttgttgaagtcaagtttggatatacacctgataatctcatatacaagaatctt
gactttggtgttgatcttgactctagaattgcattggtcggtcccaatggagccgggaag
agcactcttctgaagcttatgactggcgatctggttccactagatggcatggtgaggcgc
cacaatcacctccgcattgcgcagtaccatcagcatcttgcagagaagctggacctggac
atgtcggccctggcttacatgatgaaggaataccctgggactgaagaagagaagatgaga
gctgcggttggcaggtttggcctgtcggggaaggcgcaggtgatgcccatgaagaatctc
tctgatgggcagaggagccgtgtcatctttgcatggttagcatacaggcagccacaactg
ctgctgcttgatgagccgactaaccatctggatattgagaccattgactccctggccgag
gcactgaacgaatgggacggtggtttggtgctggtgagccatgacttcaggctgatcaac
caggttgctcaagagatctgggtgtgtgaaaaccaggcagtgactaggtgggaaggtgat
atcatggatttcaaggcacacttgaagagtaaggctggtctgtctgattag
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