Panicum virgatum (switchgrass): 120699501
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Entry
120699501 CDS
T07260
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120699501
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120699501
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120699501
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120699501
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120699501
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120699501
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH_2
MATH
UCH_1
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
120699501
NCBI-ProteinID:
XP_039839439
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All DBs
Position
3K:51072546..51097717
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AA seq
1122 aa
AA seq
DB search
MTMMTPPPLEQQQEDEEMLVPHQELPVAGPEPAPQPMEVVAQTETANTAESQPAEDPQTS
HFTWTIESFSRLNTKKHYSDVFVVGGYKWRVLIFPKGNNVDHFSMYLDVADSGNLPYGWS
RYAQFSLAVVNQIHPKFTIRKDTQHQFNARESDWGFTSFMPLSDLYDPSRGYLVNDTVVV
EAEVAVRRMVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEN
DMPSGSIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLED
KMKGTVVEGTIEQLFEGHHINYIECINVDYKSSRKESFYDLQLDVKGCRDVYASFDKYVE
VERLEGDNKYHAEQYGLQDAKKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPL
QLDLDRDDGKYLSPDADRSIRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDER
VTKEDTKKALEEQYGGEEELPQINPGFNNTPFKFTKYSNAYMLVYIRESDKEKIMCNVDE
KDIAEHLRIRLKKEQEEKEHKKKEKAEAHLYTIIKIARDEDLKDQIGKNIYFDLVDHEKV
RSFRIQKQLPFTSFKEEVAKEYGIPVQFQRFWLWAKRQNHTYRPNRPLTPHEEAQSVGQL
REVSNKAHNAELKLFLEVELGPELCPIRPPEKSKEDILLFFKLYNAEKEELRFVGRLFVK
ALGKPSDILTKLNEMAGFSPNEEIELYEEIKFEPNVMCEHIDKKLTFRSSQLEDGDIICF
QKAPVPDGDTQVRYPDVPSFLEYVHNRQVVHFRSLDKPKDDDFSLELSKLHTYDDVVERV
AHQLGLDDPSKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLVHYNQTSDILYYEVLDIPL
PELQCLKTLKVAFHHATKDEVVVHSIRLPKNSTISDVIADLKTKVELSNPDAELRLLEVF
YHKIYKIFPPHEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFMKDPNQNQQIQN
FGDPFLMVIREGDTAAEVMERIQRKLRVPDEEFSKWKLAFISMNRPEYLQDTDVVSARFQ
RRDVYGAWEQYLGLEHTDTTSKRSYTANQNRHTYEKPVKIYN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgactatgatgacgccgccccctctcgagcagcagcaggaggacgaggagatgctcgtg
ccgcaccaggagctccccgtcgccggccccgagcccgccccgcagcccatggaagtcgtt
gcgcagacggagaccgccaacaccgcggagagccagccggcggaggacccgcagacgtcg
cacttcacctggacgattgagagcttcagccggctcaacactaagaagcactactccgac
gtgtttgtcgtcggagggtacaaatggcgtgtgctgattttccccaaggggaacaatgtg
gatcacttctcgatgtatttggatgtcgcggattcagggaacctcccatatgggtggagc
cggtatgctcagttcagcttggccgttgtgaaccagatccatcccaagtttacgatacgg
aaagatacccagcaccaatttaatgcacgtgagagcgactggggtttcacatcatttatg
cctttgagtgacctgtatgacccaagcaggggctatctcgtgaatgacacagttgttgta
gaagctgaggttgctgtccgaagaatggttgattattggacttacgactcgaaaaaagag
acaggttatgtaggcctcaagaatcaaggtgctacctgttatatgaactctctgctgcaa
acattgtaccatataccatactttaggaaggctgtatatcatatgccaacaactgagaat
gacatgccatctgggagtattcctctagccctgcagagccttttttacaagctccagtat
agtgacaacagtgtagcaacgaaagagttgaccaaatcctttggatgggatacttatgat
tctttcatgcagcatgatgtgcaagagctcaacagagttctttgtgagaaacttgaagat
aagatgaagggaactgttgtggaaggaacaattgaacaattatttgaaggtcaccacatt
aattacatcgagtgcattaatgtggactacaaatccagccgaaaagaatcattttatgat
ttacagcttgatgtgaaaggttgtcgtgatgtttatgcatcatttgataaatatgtggaa
gtggaacgtctagagggtgataacaaatatcatgctgagcaatatggcttacaggatgca
aagaaaggtgtgctcttccttgatttccctcctgttttgcaacttcaactgaagcgtttt
gaatatgattacatgcgagatacaatggttaagattaatgaccgttatgaattcccgcta
caacttgatcttgatagagatgatggaaaatatctctcaccagatgcagatcgaagtatt
agaaacctttatacgcttcacagtgttcttgttcatagtggaggagtacatggaggtcac
tattatgctttcattcggccaactctctcagatcagtggtacaaattcgatgatgagcgg
gttacaaaagaagatactaaaaaggcacttgaagagcagtatgggggtgaggaagagttg
cctcaaataaaccctggtttcaataacacgccattcaaattcacaaagtattcaaatgct
tacatgcttgtctatattcgtgagagtgacaaggagaaaattatgtgtaatgttgatgag
aaggatattgcggagcacttacgtataaggttgaagaaggaacaagaagagaaagaacac
aagaaaaaggaaaaggctgaagcccacctctacactatcataaagattgctcgagatgaa
gatttgaaggatcagattggtaagaatatatattttgacctggtggaccatgagaaagtt
cgcagcttccgcattcagaagcaattgccttttacttcattcaaggaggaagttgcaaag
gaatatggcatacctgtacagtttcagcgcttctggttgtgggctaagaggcagaaccat
acataccggccaaatcgtccactgacccctcatgaggaagcacaatcagtcgggcagctt
agggaagtctcaaataaggcacacaatgctgagctgaagctgtttctggaagttgaactt
ggaccggagttatgtccaattcgtccaccagagaagagcaaagaagacatactgcttttc
ttcaagctttataatgctgagaaggaagagctccgttttgttggtagacttttcgtgaag
gctctgggaaagccatctgacatattgacgaaactaaatgaaatggctggattttctcca
aatgaagaaattgagctatatgaggaaattaagtttgagccaaatgtgatgtgtgaacat
attgacaagaaactaactttccgttctagtcagcttgaagatggagacataatctgtttc
caaaaggctcctgttcctgatggtgatacacaagtgcgctatccagatgttccttcattt
ttggagtatgttcacaataggcaggttgtgcactttcggtctctggacaaaccaaaagat
gatgatttttctctggaattgtcaaaacttcatacttatgatgatgttgttgagagagtt
gcgcatcaacttggcttggatgatccatcaaagattcggcttacatctcacaattgttac
tctcagcaacctaaaccgcagcctatcagatatcggggagtagaacatctactggacatg
cttgtccattataatcagacttctgatatcttgtattacgaggttctggacattccactg
ccagaattgcagtgtttgaaaacacttaaagttgcattccaccatgcaacaaaagatgag
gttgtagttcatagcataagacttccaaagaatagcactatcagcgacgtgattgctgac
ttgaaaaccaaggttgaactatctaatcctgatgctgagctccgcttgcttgaagtattc
taccacaagatttataagatctttccgcctcatgagaagatagagaacataaacgatcaa
tactggacactacgggctgaggagatcccagaggaagagaagaatcttggcccacatgat
cgattgattcatgtttaccatttcatgaaagaccctaatcagaaccaacaaattcagaat
tttggagatccttttttgatggttatccgcgaaggtgatactgctgccgaggtaatggag
cgcatccagagaaaacttagagttcctgacgaggaattctccaagtggaagcttgcattc
atatccatgaaccggccagagtacctccaggatactgatgttgtatcagcacgatttcag
aggagagacgtatacggtgcttgggaacaataccttggcttggagcacactgatacaaca
tcaaaaaggtcttacacagccaatcagaatcgtcacacatatgagaagcctgtgaaaatt
tataattga
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