KEGG   Panicum virgatum (switchgrass): 120699515
Entry
120699515         CDS       T07260                                 
Name
(RefSeq) cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120699515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120699515
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120699515
Spliceosome [BR:pvir03041]
 Complex B
  Other components
   Prp19 complex
    120699515
 Complex C
   Prp19-CDC5 complex
    120699515
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    120699515
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect
Other DBs
NCBI-GeneID: 120699515
NCBI-ProteinID: XP_039839456
LinkDB
Position
3K:51296994..51304893
AA seq 981 aa
MRIMIKGGVWKNTEDEILKVAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPNDDPR
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKQPPPGFYDIVGEDRPVEHVQFPT
TIDELEGKRRADIEAQLRKQDIARNKILQRQDAPAAIMQANKLNDPEAVTRRSKLMLPPP
QISDHELEEIAKMGNAGDPGLTEELGEGSIATRTLLGSYSQTPKLGMTPLRTPQRTPAGK
GDAIMMEAENLARLRESQTPLLGGDNPDLHPSDFSGVTPRKLEMQTPNPMATPLASPGPG
VTPRIGMTPSRDGHNFSLTPKGTPFRDELRINEAVEMQDGTKLELRRQDELRRSLRSGFA
SFSQPKNEYQIVMPSITEDENEEAEEKIEEDMSDRLSREKAEEEARQEALLRKRSKVLQR
SLPRPPAASVEIIRQSVIRSGESRSRSTFVPPTSLEQADELINEELLRLLEHDNAKYPLD
EKTQKEKKKGSKHQKNGGYLVPEIDDFEEAELKEAGSMVEEEIQYLRVAMGHENESFEDF
VKAHDACQEDLMFFPTNNSYGLASVSGNADKISALQNEFEIVKKRMDDEAKKASRLEQKI
KLLTQGYQVRAGKLWSQGQDTFKQMNTASTELECFQELQKQEHLAASYRVLNLTEEVNKQ
KALEQTLQSRYGDLLSGFQRIQGQLEEHKRQLKIQEEIEAENRAQAEEVVAQECAEEEER
KSRSLEEEGQTNIATDGEAAGSKGTTEDQMDVDNRNRDEEFVGPIPPAPDTEGDNDEVTI
EENTSNAQSTDPATTDDGADKTDPAKPEGQDKADDTMAVDAGPQEEGKDEPATVGASVSE
GNTAVSFDQAVSNEDNGMAPE
NT seq 2946 nt   +upstreamnt  +downstreamnt
atgaggatcatgatcaagggcggcgtgtggaagaacacggaggacgagatcctcaaggtc
gccgtcatgaagtacggcaagaaccagtgggcgcgcatctcgtcgctgctcgtccgcaag
tccgccaagcagtgcaaggcgcgctggtacgagtggctcgacccctccatcaagaagact
gagtggacaagggaagaggatgagaagctacttcatcttgctaaactcatgcctactcag
tggaggacaattgcacctattgtaggtcgaacaccatctcagtgccttgagcgttacgaa
aaactgcttgatgctgcatgcgcgaaggatgaaaattatgagcctaatgatgaccccagg
aagctgcgtcctggtgagattgacccaaaccctgagtcaaaacctgcacgtcctgatcct
gtcgatatggatgaagatgaaaaagaaatgctttctgaggcaagggctcgcttagctaac
actaggggtaaaaaagcaaaacgtaaggcaagagagaaacaacttgaagaggcaaggcgg
cttgcctcattacaaaaaaggagagaattaaaggcagccggtattgatacacggcacaga
aaaagaaagagaaaggggattgactacaatgccgagatcccttttgaaaagcaaccacct
ccaggtttttatgatattgtgggtgaagacaggccagttgaacatgtacagtttccaaca
accattgatgagcttgaagggaagagaagagcggatatagaagcacaattaagaaagcaa
gacattgcaaggaacaagattctgcagagacaggatgcccctgctgctataatgcaagcg
aataagctaaatgaccccgaagctgtcacaaggaggtccaaattgatgcttccgcctccc
caaatttctgatcatgagttagaggagatagcaaagatgggtaatgctggtgatcctggt
ttaactgaggagcttggtgaagggagtattgccacaagaactttgcttggcagctattct
cagactccaaagcttggtatgacaccattgcgaactccgcagcgaactccagctgggaag
ggtgatgcaattatgatggaggcagaaaatcttgcacgtcttagagaatcacaaacacca
ctattaggaggtgacaaccctgatcttcatccatcagatttctctggtgttacaccacgt
aagctggagatgcagactccaaatcctatggctacgcctctggcaagccctggtcctggt
gttactccaaggattgggatgacaccctcaagggatggacataacttcagtttaactcca
aaaggaactcctttccgtgatgagcttcgtataaatgaagcggtggaaatgcaggatggc
accaaacttgagcttcgcaggcaagatgaacttagaagaagcctaagatctggttttgct
tctttttcacagcctaagaatgagtaccagatagtcatgccatctattacagaggatgag
aacgaagaagccgaagagaagattgaagaggacatgtcagacaggctgtcacgagaaaag
gctgaggaagaggctaggcaggaggcattgctcagaaagagatccaaagtgctgcagagg
agtctgcctaggccacctgctgcttcagtagagattatccggcaatctgttattagaagt
ggagaaagtagaagcagaagcacttttgtgcctccaacatcacttgaacaagctgatgaa
ctgataaacgaggagctccttaggcttcttgagcatgataatgcaaaatatcctcttgat
gaaaaaactcaaaaagagaaaaagaaagggagcaaacatcagaaaaatgggggatatctt
gtccctgaaattgatgattttgaagaggctgaattaaaagaggctggttctatggtcgaa
gaggagattcaatatcttcgagtggccatgggtcatgaaaatgaatcttttgaggacttt
gtcaaagcacatgatgcatgccaagaggatcttatgttttttcctactaataatagctat
ggtttagctagtgtttctggaaatgctgataagatttctgccttgcaaaacgagtttgaa
attgtgaagaaaagaatggacgatgaagctaagaaggcttctcgtcttgagcagaagata
aagcttctgacacaaggataccaggtacgggctggaaaactctggtcacagggccaggac
acattcaagcagatgaatactgcatcaacagaactcgaatgcttccaagagctgcagaaa
caggaacaccttgctgcttcctatcgagtcttaaatttgaccgaagaagtgaataaacag
aaagcactagaacagactctccaaagccgctatggtgatctgttgtctggtttccagagg
atccaaggacagcttgaggagcacaagagacaactcaagatacaggaggaaatagaagca
gaaaatcgtgctcaggcggaggaagttgtggcacaggagtgtgctgaggaagaagaaagg
aagagtcgcagccttgaagaggaaggtcagacaaacattgctactgatggagaagctgct
ggaagcaagggtaccactgaggatcagatggatgtggacaacaggaatagggacgaggaa
tttgtaggcccaattcctccagcaccagacactgaaggggataacgatgaggtcacaatt
gaagagaacacttctaatgcccagagtactgaccctgcgaccacggatgatggggctgac
aagaccgatccagccaaaccagaaggtcaggataaagctgatgacactatggctgttgat
gctggccctcaggaagagggcaaggatgaacctgcaactgttggtgccagtgtaagtgaa
ggaaataccgctgtatctttcgatcaagctgtctcgaatgaggataatggcatggctcct
gaatga

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