Panicum virgatum (switchgrass): 120699521
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Entry
120699521 CDS
T07260
Name
(RefSeq) DNA repair protein RAD51 homolog B-like
KO
K04482
DNA repair protein RAD51
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120699521
03460 Fanconi anemia pathway
120699521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120699521
04121 Ubiquitin system [BR:
pvir04121
]
120699521
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120699521
Membrane trafficking [BR:
pvir04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
120699521
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120699521
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120699521
RecA family proteins
120699521
FA (Fanconi anemia) pathway
Other FA pathway factors
120699521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad51
RecA
AAA_25
HHH_5
ATPase
DnaB_C
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
120699521
NCBI-ProteinID:
XP_039839463
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Position
3K:51640895..51644538
Genome browser
AA seq
343 aa
AA seq
DB search
MPSSAAPQKAAAAAAPAEEEAAEHGPFPIEQLQASGIAALDVKKLKDAGLCTVESVAYSP
RKDLLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQITTGSRELDQILDGG
IETGSITEIYGEFRSAKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIAD
RFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMVVDSATALYRTDFSGRG
ELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAMFAGPQIKPIGGNIMAHAS
TTRLFLRKGRGEERICKVVSSPCLAEAEARFQISSDGVTDVKD
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgtccgcggcgccccagaaagcggcggcggcggcggcgccggctgaggaggag
gcggcggagcacgggcccttccccatcgagcagctacaggcttctggaatagctgcactt
gatgtgaaaaagctcaaagatgctggtctctgcacagtggaatctgtagcttactctccg
aggaaagatcttttgcaaattaaagggattagcgaagccaaagttgacaagataattgaa
gcagcttccaagttggttccactaggatttactagcgctagccaacttcatgcacagagg
cttgagatcatccagattacaactggatcaagagagctcgatcaaattttggatggagga
atagaaactgggtcaatcacagagatctatggtgaatttcgctctgcaaagactcagttg
tgccacactctctgtgtcacatgtcagctcccattggaccaaggtggtggtgaaggaaag
gctttgtatattgatgcagagggaacattcaggccacaaagacttctccagatagcagac
aggtttggcttgaatggtgctgatgtactggagaatgtggcttatgccagagcatataac
actgatcatcaatcaagacttttgctggaggcagcttccatgatggtggagaccaggttt
gctctgatggtcgtggatagtgccacagccctatatagaactgatttctctggtagaggg
gagctatcagcaagacagatgcatctggcaaagtttcttaggagccttcagaaattagca
gatgagtttggagtggcagtggtaatcactaaccaagtagttgctcaagtggatggctct
gcaatgtttgctgggccacaaatcaaaccaattggagggaacatcatggctcatgcttcc
acaactaggctctttcttcgcaaggggagaggggaggagcggatctgtaaagtagtaagc
tctccttgtctggctgaagctgaagcaaggtttcagatatcatctgatggtgtcactgat
gtcaaggactga
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