Panicum virgatum (switchgrass): 120699652
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Entry
120699652 CDS
T07260
Name
(RefSeq) syntaxin-132-like
KO
K08486
syntaxin 1B/2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120699652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120699652
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120699652
Membrane trafficking [BR:
pvir04131
]
SNARE
Syntaxin (Qa)
Stx-PM
120699652
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120699652
Exosomal proteins of other body fluids (saliva and urine)
120699652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin
SNARE
APC_N_CC
T2SSF
Fusion_gly
Baculo_p24
DUF6688
DUF745
RmuC
SMIM5_18_22
RSS_P20
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
120699652
NCBI-ProteinID:
XP_039839603
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Position
3K:54203942..54207351
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AA seq
307 aa
AA seq
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MHNLLTDSFELGKREQVPGNVDIELGLQGDLTSSAQPGFEGFFEQVKDIENLLNTLTKLL
KDLQNSNEESKVVTKASAMKEVKKRMDKDINEVTKVARLAKSKVEQLNKDNAANRQKPGF
GKGSGVDRSRTTTTIALTKRLRERILEFQTLREEIQKEYRDVVERRVFTVTGERADEETI
DKLIETGNGEQIFQRAIQEQGRGRVLDTLQEIQERHDAVKEIEKKLHDLHQIFLDLGVLV
EAQGEMLDNIETQVTGAAEHIETGTNLLQKAKKLQKNTRKWTCIAIIILLIIVLIVILSL
KPWSWGK
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgcataacctactcacggactcgtttgagctcggcaagagggagcaggtccctggaaat
gtcgacatcgagctcgggttgcagggtgacttgacaagttctgcgcagcctggtttcgaa
ggcttctttgaacaggtcaaggatatcgaaaacctgctcaataccttgacaaagctactg
aaggaccttcagaactcaaatgaggagtccaaagttgtcacaaaggcatctgcgatgaaa
gaggttaaaaagcgcatggataaggatatcaatgaggtgacgaaggttgctcgtctggca
aaatcaaaagtagagcaactgaacaaagataatgctgcaaacagacaaaagccaggattt
ggcaagggatcaggtgtggatcgatcccggacaacaaccaccattgctttgacaaagagg
ttgagagaacgtatattggagtttcagacattaagagaagaaattcagaaggaataccgc
gatgtagtggagcgccgtgttttcactgttactggcgagcgtgctgacgaagagactatc
gataagctgatagaaacaggcaacggcgagcagatctttcagagagcaattcaggagcaa
gggcgaggaagggtgctggacacactgcaggagatccaggagcgacacgatgcagtgaaa
gagattgagaagaagcttcatgatctgcatcagattttcctcgacttgggtgtcttggtc
gaagctcaaggagagatgctggacaacattgagacacaggtcacaggtgcagctgagcat
attgagaccggaacaaaccttctccagaaagcgaagaagctgcagaagaacacacgaaaa
tggacctgcatagcgataatcatcctcctgataatcgtacttatcgtcatcctctcccta
aaaccgtggtcatgggggaagtag
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