Panicum virgatum (switchgrass): 120699729
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Entry
120699729 CDS
T07260
Name
(RefSeq) F-box/LRR-repeat protein 3-like
KO
K10268
F-box and leucine-rich repeat protein 2/20
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120699729
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120699729
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
LRR_NXF1-5
LRR_14
LRR_At1g61320_AtMIF1
LRR_8
F-box_5
F-box-like
Motif
Other DBs
NCBI-GeneID:
120699729
NCBI-ProteinID:
XP_039839716
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All DBs
Position
3K:55365183..55369121
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AA seq
660 aa
AA seq
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MSREGQKLDCAAGVGIGVLSLDLLGQVLDRLREPRDRKACRLVSRAFERAEAAHRRALRV
LRREPLPRLLRSLPALERLDLSACASLDDASLAAAVAGAGGGLAGLRRVCLARASGVGWR
GLEALVAACSRLEAVDLSHCVGAGDREVAAVAAAAGLRELRLDKCLAVTDMGLAKVAVGC
PRLENLSVKWCREISDIGIDLLAKKCPELRSLNISYLKVGNESLRSISTLEKLEELAMVG
CSCIDDEGLELLSKGSDALQSVDVSRCDHVTYQGLASLIDGRKFLQKLHAADCLHEIGQC
FLSKLATLKETLTVLKLDGLGVSDSLLQAFGEGCNNLVEIGLSKCSGVTDEGISSLVARC
SDLRTINLTCCNLITNNALHSIADNCKMLECLRLESCSLINEKGIKQIATCCPNLKEIDL
TDCGVNDAALEYLAKCSELRILKLGLCSSISDKGISFISSNCGKLVELDLYRCNSITDDG
LAALANGCKKIKLLNLCYCNKITDSGLGHLGSLEELTNLELRCLVRITCIGISSIAIGCK
SLIELDLKRCYSVDDASLGALARNAFNLRQLTISYCQVTGLGLCHLLSSLRCLQDIKMVH
LSWVSIEGFEMALRAACGRLKKLKMLTGLKTVLSPELLQMLQACGCRIRWVNKPLVYKDC
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgagccgggaggggcagaagctcgactgcgccgccggcgtcgggatcggggtgctgtcg
ctggacctgctcggccaggtgctcgaccgcctgcgcgagccgcgggaccgcaaggcgtgc
cgcctagtcagccgcgccttcgagcgcgccgaggccgcgcaccgccgcgcgctgcgggtg
ctccgccgggagccgctcccgcgcctgctccgctcgctcccggcgctcgagcggctcgac
ctctccgcctgcgcctcgctcgacgacgcctcgctcgccgcggccgtcgccggcgccgga
gggggcctcgcggggctccgccgcgtctgcctggcccgggccagcggggtcggctggcgc
gggctggaggcgcttgtcgccgcgtgctccaggctggaggccgtcgacctgtcgcactgc
gtcggcgccggggaccgcgaggtcgccgcggtggcggccgcggccgggctcagggagctg
aggctggacaagtgcctcgctgtcacggacatggggctcgccaaggtggctgtcgggtgc
cccaggctggagaacctcagtgtcaagtggtgccgtgagatctccgacatcggaattgat
ctgctcgccaagaaatgccccgagctccgcagcctcaacatctcctacctcaaggtgggt
aatgaatcccttagatcaatatctacccttgagaagctcgaggagttggcaatggttggt
tgctcatgtatagatgatgaaggcctggaattactgagcaaggggagtgacgcattgcag
agtgttgatgtttcaagatgtgatcacgtaacttaccagggattagcttcactcatagat
ggtcgcaaatttctccaaaagttacatgccgcagattgtttgcatgagataggacagtgt
tttctgtccaagttggcaacactgaaggaaaccttgactgtgttgaaactcgatggtctt
ggagtctcggactctctccttcaagcctttggtgaaggttgtaacaacctggttgagatt
ggacttagcaaatgcagcggtgttacagatgaagggatctcatctcttgtggctcgatgt
agtgacctgaggacaattaatctcacatgctgcaatctcatcaccaataatgcgcttcat
tcaatagcggacaactgtaagatgcttgaatgcttgcggttagaatcctgctctttgata
aatgagaagggaataaagcaaattgcaacttgttgccccaatcttaaggagatagacctc
actgactgtggagtgaatgatgcagcgctggagtacttggctaaatgttctgaactgcga
atattgaaattaggcctatgctcaagtatttctgacaaaggcatttcttttattagttca
aactgtggaaagctcgtggagcttgacctctaccggtgcaactccattactgatgatgga
ctggcagctttagcaaatggctgcaagaagattaagttgttaaacttgtgctactgcaat
aagattacagatagtggtttgggccacttaggctctctggaggagcttacaaatcttgag
ctgaggtgcttggtccgcatcacgtgcatagggatctcgtcgattgcaatcggatgcaag
agcctgatagaactggatttgaaacgttgctattcggttgatgatgctagtctgggggcc
cttgctcgtaatgctttcaaccttagacagcttacgatatcatactgccaagtcaccggc
ttgggcctgtgccacctgctgagctccctgcgctgcctccaggacattaagatggtgcac
ctctcgtgggtctccatcgaagggtttgagatggcgctgcgagcagcctgtgggaggctg
aagaagctgaagatgctcaccgggctgaagaccgtgctgtcccctgagctcctccagatg
ctgcaggcgtgcggctgccgaataagatgggtcaacaagcctctcgtctacaaggactgc
tga
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