Panicum virgatum (switchgrass): 120699847
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Entry
120699847 CDS
T07260
Name
(RefSeq) protein spotted leaf 11-like
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120699847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120699847
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120699847
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120699847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
Arm_2
zf-RING_UBOX
Neurochondrin
KAP
zf-C3HC4_4
zf-Nse
zf-C3HC4_2
HEAT_EZ
zf-C3HC4
ARM_LIN_C
Phage_GPO
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
120699847
NCBI-ProteinID:
XP_039839867
LinkDB
All DBs
Position
3K:complement(57351278..57356248)
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AA seq
677 aa
AA seq
DB search
MAGDGGAAAERVAAAVEAAAAGGWEFRNAYRRQLLALSRRIRLLGPFAEELREARRGPTD
AGKERERERALAPLADALEKALDLLRLGRDGSRIFLVLERDNVLKKFQGVIAQLEQALCD
FPYDKLDISDEVREQVELVHAQLRRAKERADMPDDEFYNDVLSLYNKSYDPSAELDILER
LSEKLHLMTITDLTHESLALHEMVASGGGQDPGEHIEKMSMLLKKMKDFVQTQNPEMGPP
IVTKLMDSNGEPRPVNIPDEFRCPISLELMKDPVIVATGQTYERACIEKWLASGHHTCPN
TQQRMTNTTLTPNYVLRSLIAQWCEANGIEPPKRSSQPNKPTSACSSSERANIDALLSQL
CSHDPEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNL
SIHEDNKASIISSGAVPSIVHVLKNGSMQARENAAATLFSLSVIDEYKVTIGGTGAIPAL
VVLLSEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAIL
SILSSHPEGKAAIGAAEPVPVLVEMIGSGSPRNRENAAAVMLHLCSGEQQLVHLARAQEC
RIMVPLRELALNGTERGKRKAVLLLERMSRFLVQQQEEKEAQLLASAQAIPRIAEQVQET
DIPEQLDSPSPQYPMVA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgacggcggggccgccgcggagagggtggcggcggccgtggaggcggcggcg
gcgggcggctgggagttccggaacgcgtaccggcgccagctcctggcgctgtcgcgccgg
attcggctcctcggtcccttcgcggaggagctccgggaggcgcgccggggccccacggac
gcggggaaggagcgggagcgggagcgggcgctggcgccgctcgccgacgcgctggagaag
gcgctcgacctgctccggctcggccgcgacgggagcaggatcttcctggtccttgagagg
gataatgtactgaagaagtttcaaggagtaattgctcagctagagcaagctttgtgtgat
tttccatacgataaattggatatatcagatgaagttagagagcaggttgagttagtgcat
gcacagctcagaagagcaaaagaacgggcagacatgcctgatgatgagttctacaatgac
gtactgtctctgtataacaagagctatgacccaagtgctgaactggatatccttgaaaga
ttgtcagaaaagttacacctgatgaccatcactgatctcacacacgaatcgcttgctttg
catgagatggtggcatctggtggtggtcaggatccaggagaacacattgagaaaatgtca
atgctattgaagaagatgaaggactttgtgcaaactcaaaaccctgagatggggccgcca
atagttaccaagctaatggattccaacggggagccaaggcctgtaaacattcctgatgag
ttccggtgtccaatttctcttgagctaatgaaagatcctgttattgttgctactggccag
acatatgagcgggcatgcatcgagaagtggctagcttctgggcaccatacttgtccaaat
actcagcagaggatgacaaacacaacactgacaccgaactatgttcttagaagtcttatt
gcccagtggtgcgaggccaacgggattgagccacccaaacgttcatcgcaacctaacaag
cctacatcagcatgctcttcgagcgaacgtgctaacatcgatgctcttctgtcccaatta
tgctctcatgatcctgaggagcagaggtcagctgctgcagaactccggctcctagcaaag
cggaatgcaaacaacaggatttgcattgctgaggctggtgccattcccttactactgagt
ctcttatcttcatctgacctgcggactcaagaacatgctgtgactgcacttctgaacctc
tccatacacgaggataataaggcaagcatcatttcctcaggtgctgtgccgagcatagtt
catgttctgaagaatggcagcatgcaagcacgggagaatgctgcagctacacttttcagc
ctctcagtgatcgatgaatacaaagtaacaattgggggaaccggggctatccctgccctt
gtagttcttttaagtgagggcagccaacggggaaagaaagacgccgcagcagctctattc
aacctttgcatttatcaagggaacaagggtcgtgcaatacgagctggccttgtgccgctc
atcatggggctggtgacaaaccccacaggagctcttatggacgaggctatggcaatactc
tcgatattgtcgagccaccctgaggggaaggcggctattggtgcagcggagccagttcct
gttcttgtggagatgattggaagcgggtcaccaaggaatagagagaatgctgcagctgtg
atgttacatctttgcagtggtgagcaacaacttgtgcatttggcccgtgcacaagagtgc
agaatcatggtcccgctacgggagctggccctgaatggcacggagaggggaaagagaaag
gcggtgctgctgcttgagcgaatgagcagattcctggttcagcaacaagaggaaaaggaa
gcccagctgctggcatccgcacaggccattcctcggatcgcagaacaggtccaagagacc
gacatccctgaacagttggatagtccttcacctcaatatcccatggtcgcatga
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integrated database retrieval system
