Panicum virgatum (switchgrass): 120700098
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Entry
120700098 CDS
T07260
Name
(RefSeq) WD repeat-containing protein 75-like
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120700098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120700098
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120700098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
120700098
NCBI-ProteinID:
XP_039840207
LinkDB
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Position
3K:61519458..61525854
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AA seq
795 aa
AA seq
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MITGGQSFVSAPPAFSADGRLLLVCSGCTVSVFSTATAMLVSELEGHEGDVTAVVVMPPP
AGAATTPAAKLASNCWTAGLDGVLIYWDFVAAEAVRKVQVGLPVHSMVIPNICRTSKGAE
VSTPFAFVSVEDTSKPVNEPKALRGQMRIYDLTKGRKVGYPLAETRKPEKIVASSSGEFL
GITNKRKLHIWRIPTKDFKHDKIRKIKLRHTKNLTTLAFHPSEGIVAAGDVTGRILIWRG
FGNAKFSESSAKSKVDEGRDGVRGNDDADTCTTWHWHSSRVRFLKFSSDGAYLFSGGLEG
VIVVWQLDTGKRRYKPRLGSPLLFFVDSPDSSISCVSCTNNQVYLLKMPNMEVMRSIAGI
KLPTASPSLGGSDRVVYGFDYTNKLVAIPTEDYCIQFYNLFENTEVSELQVCERNFQPVD
DITMYISLVSLSIDGSLMCTVDVKLPEEELGGLVTLKFWNHGSSAGNYFLSTVIYEPHSD
AGVSAVAFRPGRNMAVSSSFGGNFKVWVQSLSSQSSNERNYAGWRCQSVGSYKKKPMTAA
AFSADGSVLAVAAESVITLWDPDNNALVGVIAETLSPITNLSFVGTSVFLMSLCQSSRPE
VTVWNVSNLSMQWAYSIYAEAACCSPVGNEFAVLTLLSCPDGGTSTEQNGAILLFNAESP
NPVASWSVKKARGGSISFVKGDVSSKDKETMLLVYVNGSHEYVIFDPRKREELVVSRNID
RKVQAEELAPIGYASIYGELPKLESKKEVSDVPFIPSDRPWETIFSGSSHVLPPLTKLCS
AFLSSLLEKRSVTNE
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccggcggccagagcttcgtctccgcgccgccggccttctcggccgacggccgc
ctcctcctcgtctgctccggctgcaccgtctccgtcttcagcaccgccaccgccatgctg
gtgtcggagctggaggggcatgagggggacgtcacggcggtggtggtgatgccgccgccg
gctggtgcggctacgaccccggcggccaagctcgcgagcaactgctggaccgcggggctc
gacggcgtgctcatatactgggacttcgttgcggcggaggccgtgcggaaggtccaggtc
ggactccccgtccactccatggtgatccctaacatatgtaggacctcaaaaggagctgag
gtgtcgactccctttgcatttgtctctgtcgaagatacgagtaagccagttaatgaacca
aaagctctgcgtgggcagatgagaatttatgacctgacgaaggggcgtaaagtgggttat
cccctggctgagacaaggaaaccagaaaagattgttgcaagtagttctggagaattcttg
ggcatcacaaataaaagaaagctccatatctggagaataccaacgaaagatttcaagcat
gataagattaggaagataaagctccggcacaccaaaaaccttaccactctggctttccat
ccaagcgagggaattgtggctgctggtgatgtaacagggaggatcttgatttggagaggt
tttggaaatgcaaagttctctgaaagtagtgcaaagtcgaaagtggatgaaggaagggat
ggtgttaggggcaatgatgatgcagacacttgcacgacatggcattggcattcaagcaga
gtgaggtttctcaaattttcctctgatggagcgtacttgttctcaggtggtttggaggga
gttattgttgtatggcagttagatactggaaagagaagatataaaccacgtcttgggtct
cctcttttgttctttgtagattctccagattcttccatttcctgtgtgtcatgtacaaat
aaccaagtgtatctcctaaaaatgcctaatatggaggtcatgagatctattgctggaatt
aagctgccaactgcttccccgagcttgggtggatctgatcgggttgtgtatggatttgat
tatactaataaacttgttgctataccgacggaagattactgcatacaattctacaatctg
tttgagaacactgaggtttcagagttgcaagtatgtgagaggaattttcagcctgttgat
gatatcacgatgtacatttccttagtttcattgtcaatagatggcagtttgatgtgcact
gtggacgtcaagcttcctgaagaagaattaggtggtcttgttacactgaagttctggaat
catgggtctagtgcaggaaattattttttgtccactgtcatttatgagcctcacagtgat
gctggggtttctgctgttgctttccgtcctggaagaaatatggctgtgagctcttctttt
ggtggtaacttcaaggtttgggtccagagtttgtcttcacaatcaagcaatgaaagaaat
tatgctggttggagatgccaatcggttggctcttacaagaagaaacctatgacagcagca
gccttctcagccgatggatctgttcttgcggttgcagctgagagtgtcatcacattgtgg
gatcctgataacaatgcacttgttggtgtaattgcagaaacgctatcgcccattacaaat
ctttctttcgttgggacatcggtgtttttgatgtctctatgtcagagttcaagaccagag
gttactgtatggaatgtttcaaatctttccatgcagtgggcttacagcatttatgccgaa
gctgcatgctgttcgccagttgggaatgaatttgcagttcttacccttctgagctgtcct
gatggaggaacatcgacagagcaaaatggagcgattctactttttaatgcagaaagcccg
aaccctgttgcttcctggtcggtaaagaaggcaaggggtggcagcatttcttttgtgaag
ggtgatgtctcttcgaaagataaagagacaatgttgctggtttatgtaaatggttctcat
gaatatgtcatctttgatccccggaagagagaggagttggtcgttagcaggaacatagac
aggaaggttcaagctgaggaacttgcaccaatcggctacgcatctatctacggagagctt
ccaaaactggagtcaaagaaagaggtttcagatgttccatttatcccttcagacaggcct
tgggagaccatattcagtggctcgtcacatgttcttccgcccctcacaaaactatgttca
gctttcttgtcatcattgctcgagaagagatcagtcacaaatgagtga
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