Panicum virgatum (switchgrass): 120700107
Help
Entry
120700107 CDS
T07260
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 1-like
KO
K13103
tuftelin-interacting protein 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120700107
Spliceosome [BR:
pvir03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120700107
Other components
Complex C specific factors
120700107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
120700107
NCBI-ProteinID:
XP_039840223
LinkDB
All DBs
Position
3K:61681542..61691826
Genome browser
AA seq
844 aa
AA seq
DB search
MAEEAEGMDRFDMEGDFQGGRFGRDGEFYYRSRRERAPQTRDDAIYGVFAEGDSDYDSED
DEGSRRRGRRKRRRDGGGEPDLTKPVQFVSTGKFMPTQEPEPEPDQRSGLGRAAASAAKE
EEAEDEEQDDEGDTEMLPTMFGRIRDGARARREEKEREREKAARWRQAAGVGAGEPAAAL
GSLEANSKVAKMMEMMGYKKGMGLGKNEQGMTAPVETILRPKNAGLGSVEGFKEPKPMRA
KENLPAPTPPPTSGKKEKRWSKKASTKKVPVLTKNELLAMHAEQEQEEEPAVVQKVIDMR
GPQVRVLTDLKGLNKEQEMETNDVPMPELQYNVRLLVDEARADVLRLHGQLRREQEKVAS
LVREKEKVAKQEALQKHQLQVMERIAETLEQVRVDDTAGVLTLDGLLRTFHGLKVQFEEE
FKMCSIAWIACRYAHPLLIRIFQGWQPLQDPKFGLDVMKKWKDLLQGDQPYDFSDGSASM
TPYVQLVSEVILPAVRISGTNSWEAREPEPMLNFLELWDNKKLLPPILLQSILEHVIMPK
LSAAVDSWDPRRESVPIHVWVHPWLPMLRERIETLCHSIRYKLSTVLHVWQAHDASAYAV
LSPWKDVFDSASWEDLIVRYIIPKLRLALQEFQINPANQKLDQFNWVILWASAIPVHLMV
HMLEVDFFSKWQQVLYHWLCSPNPDFNEIMNWYKSWKGLFPPELLANERIRMLLTAGLDM
MNQAAEGLEVVQPGARENVGYLRATEKRQFDAAQQAYHAASGAAIADLSFKESIQAYAME
QGLLFMPRVGKFYNGMPVYEFGTVSICIDSVKRLLYAQLQERIERWSAVTLTQLMEMNRM
GRSR
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggaggcggaggggatggaccggttcgacatggaaggggacttccagggcggg
cggttcggccgcgacggggagttctactaccggagccggcgggagcgggcgccgcagacc
cgcgacgacgccatctacggggtgttcgcggagggcgactccgactacgactcggaggac
gacgaggggtcccgccgccgcggccgccggaagcgccgcagggacggcggcggggagccg
gacctcaccaagcccgtccagttcgtctccaccggcaagttcatgcccacccaggagccg
gagcccgagcccgaccagaggtcggggctcgggcgcgccgctgcgtctgctgccaaggag
gaggaggcggaggatgaggagcaggacgacgagggggacaccgagatgctgccgacgatg
ttcggcaggatcagggacggcgcccgcgcgaggcgggaggagaaggagcgggagcgcgag
aaggcggcgcgctggcgccaggcagccggggtgggggcgggggagccggcagcggccctt
ggaagcctggaggctaattccaaggtggccaagatgatggaaatgatggggtacaagaaa
ggaatggggcttggaaagaacgagcaggggatgacagcgccggtggagaccatcttgcga
cccaagaacgctggcctggggagtgtggaaggtttcaaggaacccaagcctatgagggct
aaggagaacttgccggccccgactcctccgccaacatcagggaagaaggagaagcgttgg
tccaagaaggctagcacaaagaaagttccagtcttgacgaagaatgagctcctggccatg
catgccgagcaggaacaggaggaggagcccgcagttgtccagaaggtgattgacatgcga
gggccccaggtacgggtgctgacggacttgaagggtctcaataaagaacaagagatggag
acgaatgatgtgccaatgccggaactgcagtacaatgtgcgcctgcttgttgatgaggct
agggctgatgttctgaggttgcatgggcagctgcgaagggagcaggagaaggtagctagc
ttggtgcgcgagaaggaaaaggtggccaagcaggaggcattgcagaaacaccagctgcag
gtgatggagagaattgcagagacactggagcaggtccgcgtggatgatacagctggcgtg
cttactctggatgggttgctccggacattccatggcttgaaagtgcagtttgaggaggag
ttcaagatgtgcagcattgcatggattgcttgcagatatgctcatccgctgctaatccga
atcttccagggatggcagcctctgcaggatccgaagtttgggttagatgtcatgaaaaag
tggaaggacctgctgcaaggggaccaaccatatgacttctcagatggttctgcatcaatg
acaccatatgtgcagcttgttagtgaagtcatcctgccggctgtgaggatatcaggaacc
aattcatgggaggctagggaaccagaaccaatgctcaactttcttgagttatgggataat
aagaagttgcttcctcctattttgcttcaatcaatactagagcatgtgataatgccaaag
ctctcagctgctgtggattcatgggaccctcgcagggagagtgtaccgatccatgtctgg
gtacacccatggttgccaatgctaagagaaaggatagagaccttgtgccattctattcga
tacaagctgagcactgtcctccacgtatggcaagcacatgatgcttcggcgtatgctgtg
ttgtccccatggaaggatgtgtttgattcggcaagctgggaagacctgattgtgcggtat
atcattcctaaactgagattggcactgcaagagtttcagatcaacccagcaaaccagaaa
cttgatcagttcaactgggtgattttgtgggcatctgcaatcccagtgcacctcatggtc
catatgttggaggttgatttcttcagtaagtggcagcaggtcctataccattggttgtgc
tcaccaaatcctgatttcaatgagataatgaactggtataagagctggaagggccttttc
ccaccagagttacttgccaatgagcgcatacggatgcttctaaccgctggtcttgacatg
atgaaccaagctgctgaaggactagaggtggtgcaacctggggctagggagaatgtgggc
tacttgagagcaactgagaagcgtcaatttgatgcagcacagcaggcttaccatgctgcc
tcaggggcagccattgcggatttgagcttcaaggagtctatccaggcctatgcaatggag
caagggctgctgtttatgcctagagttggcaagttctacaatggcatgccggtgtatgag
tttggcaccgttagtatttgcatagactctgtgaagcgactattgtatgcacaacttcaa
gagagaattgagagatggagtgctgtaactcttacacaattgatggaaatgaaccgaatg
ggaagatcacgctaa
DBGET
integrated database retrieval system
