Panicum virgatum (switchgrass): 120700201
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Entry
120700201 CDS
T07260
Name
(RefSeq) phytoene synthase 2, chloroplastic-like
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120700201
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120700201
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
120700201
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Squalene/phytoene synthase
120700201
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
120700201
NCBI-ProteinID:
XP_039840354
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Position
3K:63151763..63154863
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AA seq
398 aa
AA seq
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MAGSSAVWAAHHASCRPQHPPTSSSSQRPRRGAGVLPLPPRRGGASLAAAAATATAAPPV
ARTASEEAVYEVVLRQAALVEGAVASAAAARRRPRWAEEKEEEGLRGWGLLGDAYDRCGE
VCAEYAKTFYLGTQLMTPERREAVWAIYVWCRRTDELVDGPNASYITPTALDRWEKRLED
LFEGRPYDMYDAALSDTVSKFPVDIQPFKDMIEGMRLDLWKSRYRTFDELYLYCYYVAGT
VGLMTVPVMGIAPDSKASTESVYNAALALGIANQLTNILRDVGEDARRGRIYLPLDELAQ
AGLTEDDIFRGKVTDKWRRFMKGQIQRARLFFDEAEKGVAHLDSASRWPVLASLWLYRQI
LDAIEANDYNNFTKRAYVAKAKKLLSLPAAYARAAVGS
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgggctcctccgcggtctgggccgcgcaccacgccagctgcaggccccagcacccg
cccacctcctcctcgtcccagcgcccgcgccggggcgccggcgtcctcccgctcccgccc
aggcggggcggcgcctccctcgccgccgccgcggccaccgccaccgcggcgccgcccgtg
gcgaggacggcgtcggaggaggccgtctacgaggtcgtgctgcggcaggcggcgctcgtg
gagggcgccgtcgcgagcgccgcggcggcgcggcggcgcccgcgctgggcggaggagaag
gaggaggaggggctccgcgggtggggcctcctcggcgacgcctacgaccgctgcggcgag
gtctgcgccgagtacgccaagaccttctacctcggcacacagcttatgactcctgaaagg
cgcgaagctgtctgggcaatctatgtatggtgcagaagaaccgacgaactagtggatggt
cctaacgcgtcgtacatcacaccgactgctcttgatcggtgggagaagcggctagaagat
cttttcgaaggccgtccgtatgacatgtacgatgcagccctctcagacacggtgtcaaag
tttccggtagatatccagccattcaaagatatgattgaagggatgaggcttgacttgtgg
aagtcgaggtacaggacctttgatgagctctacctctactgctactacgtcgctggcaca
gttggcctcatgacagttcctgtaatgggcatcgccccagactcaaaggcctctactgag
agcgtgtacaatgctgcactggctcttggcatcgctaaccaactgacgaatattctcaga
gatgtaggcgaagatgcaaggagagggagaatataccttccactggacgagcttgcacag
gcaggtctgacggaagatgacattttcagagggaaagtgactgataagtggaggagattc
atgaagggccagattcagcgtgccaggttgttcttcgacgaggctgagaagggtgtggcc
catctagactctgcgagcagatggccggtcctcgcgtccctctggctgtacaggcagatc
ctcgatgccatcgaggcgaatgactacaacaacttcaccaagcgcgcctatgtagccaag
gcgaagaagctgctgtcgctgccagccgcgtacgcaagagcagctgttgggtcatga
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