Panicum virgatum (switchgrass): 120700230
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Entry
120700230 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120700230 isoform X1
KO
K24869
S phase cyclin A-associated protein in the endoplasmic reticulum
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pvir03037
]
120700230
Cilium and associated proteins [BR:
pvir03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120700230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SCAPER_N
Motif
Other DBs
NCBI-GeneID:
120700230
NCBI-ProteinID:
XP_039840383
LinkDB
All DBs
Position
3K:63500151..63507576
Genome browser
AA seq
1619 aa
AA seq
DB search
MENDNGDADDLGSGWFEVKKKHRSSSKYTLQRSSGGSSNKIPNLPSRSRANYNSDSSRLH
DRPQHPPPSVHAGVGVGVDESGSGETTNVHAEGCNDVGTSGLKSVLNASASEYVVERPEE
LLVAEETSEPPKTGLADHANPSVPHESSTCSDSLAKFADLSHHVKCSPKTELVGALSNTP
VKFGDFDEVPGLSLPSDSCRDNSSSTDSHGEDGAHFRNEQKDESKLKLETDSCTIIDEAS
PIIIQGTETPKDDTRGPQDKHEIPDSMLNVSGSTTSTDSVSQSCSNNDHEVPVTSSSVAS
TESRTLLLDHAPVSADFGSETAESKERFRQRLWCFLFENLNRAVDELYLLCELECDMEQI
NESILVLEEAISDFQELKSRAEHFDNTKKSAGVAKEGMPMTVKADHRRPHALSWEVRRMS
SSPHRQEILSSSLEAFQRIQLELACKQAGITAERFTSSSSEEVSGGSSKLTTASATVRNI
SLKVESQVKLPDSSEKKITGEKQIRDAFKSDKTHPQSMPSYSARSRRGSLEPISEIDKHT
FKNSKELPDNKFDRLKSTDVVKKSTVHLDKEKQITAPWKSMDAWKEKRNWEDILKSPARS
SRVSHSPGAGRKVTDRARVLHDKLMSPEKKKRSTVDMKKEAEEKHARALRIRSQLESERV
QRLQRTSEKLSRVNEWQAVRSSKLREVMNARHQRGESRHEAYLAQVAKRAGDESTKVNEV
RFITSLNEENKKFLLRQKLYDSEMRRAEKLQVIKTKQKEDTAREEAVLERRKFLEAEKMQ
RLAEIQRKKEEAIFRREEERKASSAAREARAAEQQRRKKIRAKAQQEEAELLAQKLSEKL
RESEQRRKYHLEQIRERASMDLRDQPSPFQRRFPSKDGQNRSNYTNSGEDSQTTGNSSAA
DSMAKSSNNVQMKRRIKKTRQRLMALKHEFIEPPIGESTGITHRAALGAAKAKLSRWLQD
LQRHRQARKEGAASIGLIVGDITKYLEGKDLELHASRQVGLLDFIASALPASHTSKPGAC
QVTVYLLHLLRVLLSLPANRTYFLVQNLLPPIIPMLSASLENYIKVAASNSGSSNLLSNK
TSTENTESSGEVLDGFLWTVTTIVGHVHLNDEQLQMQGGLIELIVAYQIIHRLRDLFALY
DRPQVEGSPLPSSILFGLNLLAVLTSKPGNFSTIDWESCKCRTLGGNIVQKYEYLSSQDS
MGNQLMTLDQSGDTKLPSLCSELTEENKSCKLHDLSIQGDRKYVDETRKDLIVSDGLNNS
AMQLPDLGITTEKCSEIPSQGDESSTTDSFLEARKVNNVGSVYNNSPGKGNETNLKHPVM
LLLSAMAETGLVSLPSLLTAVLLQANNRSSSDQTPAILPSNFEEVATGVLKVLNNMARLD
INLLQCMLARSDLKMEFFHLISFLLSHCMNKWRVPNDQVGLLLLESLLLLGYFSLFHAEN
QAVLRWGKSPTILHKVCDLPFVFFSDPELMPILAAALIAACYGCDQNLSVVQQEISTDML
RSLIKSCQTSGLTPPDSFAVDGSGNNSGDNTQSLLDTRNSQGDIPIRPSRKIGRPVVGKS
VSGGIRYNRNRAQKDGRGRGVDDGPLKRRAGEASSNFLLHRKIPASFLDRAEEFFCREK
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgataatggagatgcggatgaccttggatcagggtggtttgaagtaaaaaag
aaacatcggtccagctcaaagtacacattgcagaggtcttctggaggttccagcaataaa
attccaaacttaccatcacggtcacgggccaactataacagtgacagttcaaggttgcat
gacaggccgcaacacccacctccgagtgtacatgctggtgttggtgttggtgttgatgaa
tctggtagtggagaaacaactaatgttcacgctgaaggatgcaatgatgtaggcaccagt
ggtctcaagagtgtcctaaatgcttcagcctcggagtatgtagtagaaagacctgaagaa
ctgctggtggctgaagaaacaagtgaacctcctaaaactggtctggctgatcatgcaaat
ccttcagttcctcatgaatcctccacctgttcagacagccttgcaaaatttgcagacctt
tctcatcatgtaaaatgttctccaaaaacagagctagtaggtgccttgtccaatactcct
gtaaagtttggggactttgatgaagttccaggtctatcactaccctcagattcatgcaga
gataatagttcttccacagacagccatggtgaagatggtgcacatttcagaaatgaacaa
aaggatgaaagtaaactcaaactggagacggactcttgtacaataattgatgaggcatcc
ccaattattatacaaggaactgagacgcccaaagatgacacgagagggccacaggataaa
catgaaataccagacagtatgttgaatgttagtggttcaacaacctcaactgactctgtt
tcccaatcctgctccaataatgatcatgaagttccagttacatcttcatctgttgcttcc
acagaaagtagaacgctacttcttgaccatgccccagtttctgcagattttggatctgaa
actgctgagagcaaagaaagattcaggcagaggctatggtgttttctttttgagaatctg
aatagggctgttgatgaactttacctcctctgtgaactagaatgcgacatggaacaaatt
aatgaatccattcttgttcttgaagaagctatatctgattttcaagaacttaaatccaga
gcagagcattttgataacaccaaaaaatctgctggtgtagcgaaggaggggatgccaatg
actgtgaaagctgaccataggagacctcatgccttgtcttgggaagttagaaggatgtca
agttcaccacataggcaagaaatactctcttcatctctagaggccttccagagaatccaa
ctggaactggcatgcaagcaggctggtataacagcagagagatttacatccagctcttct
gaggaagtttcaggtggctcgtcaaagctgactacagcatcggcaactgttaggaatata
agtttgaaagtggagagtcaggtaaaacttcctgatagtagtgagaaaaagattactgga
gagaagcaaatcagggatgcattcaagtcagataaaacacatccacaaagtatgccttca
tattctgcaaggagtagaagagggtcactagaaccgatctcggaaatagataagcacacc
tttaagaatagcaaggagttgccagataacaaatttgacaggctcaagtcaactgatgtt
gttaaaaagagtacagttcatcttgataaggagaagcaaattacagcaccttggaagtca
atggatgcctggaaggagaaaagaaactgggaagacatattgaaatctcctgcaaggagt
tctcgtgtttctcattctcctggtgctggcagaaaagttacagatcgtgctcgtgtttta
catgacaaattgatgtctcctgaaaagaaaaaaagaagcaccgtggatatgaaaaaagaa
gcagaagaaaagcatgcgcgagcattgcgtattaggagtcaactagagagtgagagggtt
cagaggctacaacgtacctctgaaaagttgagtcgtgtcaatgagtggcaggctgtgcgc
agctcaaaactgcgagaagtaatgaatgcacgccatcaacgtggtgaatctcgtcatgaa
gcttatcttgcccaggttgcaaaaagagctggtgatgagagtactaaagtaaatgaggtc
cgttttattacatcgttgaatgaggaaaacaagaaattcttgctgaggcagaaactttat
gattctgaaatgcggagagctgaaaagctacaggtgatcaaaacaaagcaaaaggaggac
actgcaagggaagaagcagttttggaacgaagaaagttccttgaagctgagaagatgcag
cgccttgcagaaatacagcgcaagaaagaagaggctattttcagaagagaagaggagcgc
aaagcatctagtgctgcaagggaagcaagggctgctgaacagcaacgcagaaaaaaaata
agagcaaaagcgcaacaagaggaagctgaacttttagcccaaaaattatctgaaaagctc
cgtgagagtgagcagcgccgtaagtatcatctagaacagatacgcgagcgagcttcaatg
gatcttagggaccagccttcaccttttcagcgccgctttccaagtaaagatggccaaaac
cgttcaaattatactaatagtggtgaagattcacagacaactggcaattcgagtgctgca
gattctatggctaaatcatctaataatgtacagatgaaacgaaggattaaaaagactcgc
cagagattaatggctctaaagcatgaatttattgaaccaccaataggtgaaagtaccgga
atcacacacagggctgctctaggagctgccaaagctaaattaagtagatggcttcaagac
ctacagagacatcgtcaagctagaaaagaaggtgctgctagtattggtttgattgttggt
gacataacaaagtatttagaaggaaaggatcttgaactacacgcatcaagacaagttggt
ctgcttgacttcatcgcatccgccttacctgcatcacacacttcaaagcctggagcttgt
caagtcactgtctaccttttgcacctgctgagagtgttgctctcacttccagctaatcga
acatattttctagtacagaatcttttacctcctattattccgatgctatcagcatcactg
gagaattacattaaggtggcagcatccaactctggaagctcaaatcttctgtctaacaaa
acttcaactgagaatacagagtcgtcaggtgaagtgttagatggcttcttatggacagtg
accacaattgttggccatgtgcacctcaatgatgaacaacttcaaatgcaaggaggtttg
atcgaactgattgtagcttatcaaataattcaccgtctccgagatttgtttgcgctttat
gataggccccaggtggaaggatccccactcccatcatcgatactctttggcctcaacctt
ttggctgtgttaacatctaaacctggaaatttctctaccatcgattgggagtcctgcaaa
tgcaggacattaggtggcaatatagttcaaaaatatgaatatcttagctcacaagacagt
atggggaaccagttgatgacactagatcagtctggagatacaaaattgccatccttgtgt
agtgaactgaccgaagaaaacaaatcctgtaaactgcatgatttgagcattcaaggggac
agaaaatatgttgatgaaactagaaaagacttgatagtctctgatggcctgaataactca
gcaatgcaactgcctgatttggggattactacagagaagtgttctgaaattcctagccag
ggagatgaaagtagcacaacagacagttttcttgaagcaagaaaggtgaacaatgtaggt
tcagtgtataataatagtcctggaaaaggcaatgaaacaaacctaaagcatcctgtaatg
cttttactctctgcaatggctgagactggccttgttagtctaccatcacttttgactgct
gttttgctccaggcaaataatagatcatcatcagatcagactccagctattcttccatca
aatttcgaagaagtggccactggcgtgttaaaagttttgaacaatatggcacgtttggat
attaaccttctgcagtgcatgctggctagatcagatctaaagatggaattcttccattta
atcagcttcctgctgagtcattgcatgaacaaatggagggtaccaaatgatcaggttggt
ttgctgcttctagaatctctgctacttcttggctacttttctttgttccatgctgagaac
caagctgttcttcggtggggaaagagtcccaccatacttcataaggtgtgcgacctgcca
tttgttttcttcagtgaccccgagctgatgcccatcttggctgctgctctgatcgctgct
tgctatggttgtgatcagaacctaagtgttgtacagcaggaaataagcacagatatgctt
cgttctttgatcaagtcctgtcaaacatcaggattgactcctccagattcctttgctgta
gatggttctggaaacaattcaggtgataacactcagagtttactcgatactaggaactca
caaggtgacatcccaataaggccaagccgtaaaattggacggccagttgttgggaagagt
gtttcaggaggaatcagatacaacagaaatagggctcagaaggatggtagaggaagaggt
gttgatgatgggcctctgaagcgaagagctggagaagcttcatctaacttcttgttgcat
agaaagatcccagcttctttcttggacagagccgaggagttcttctgccgtgagaaatga
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