Panicum virgatum (switchgrass): 120700382
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Entry
120700382 CDS
T07260
Name
(RefSeq) U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
KO
K12846
U4/U6.U5 tri-snRNP-associated protein 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120700382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120700382
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
120700382
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNRNP27
Motif
Other DBs
NCBI-GeneID:
120700382
NCBI-ProteinID:
XP_039840530
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Position
1K:complement(27013025..27021864)
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AA seq
196 aa
AA seq
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MSDRRRDKEKPRDRDREKDRDLDRHRDRDRDRDRDRDRVRDRDRDRDRRRDRERKRSRSR
SPSADRDRSHRRHSHSHRGRSSPSPDAGRHKRRRDASPADADQHHREDKKSVDPPAPPKG
GGDPAAVAAVGDGDVDAEELEMMKMMGIPVGFDSTKGKHVPDADVSGVRVVTKRQPRQYM
NRRGGFNRPLPPERNR
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccgccgccgcgacaaggagaagcctcgcgaccgcgaccgtgaaaaggaccgt
gacctcgaccgccatcgcgaccgggatcgcgacagggacagggacagggatcgggtccgg
gatagggatcgcgaccgcgaccgccgccgcgaccgcgagcggaagcgctcccggtcccgc
tccccgtcagcagaccgggaccgctcccaccgccgccactcccattcccaccgaggccgc
tcgtccccctcccctgacgccggtcgccacaagcgccgccgggacgcgtcccctgccgac
gcagaccagcatcacagggaggacaagaagtccgtcgatcctcccgcgccacccaagggc
ggaggggacccggcggcggtcgcagcggtgggtgacggggacgtggatgcggaggagctc
gagatgatgaagatgatgggcatccccgtcgggttcgactccaccaaggggaagcacgtt
cccgacgccgacgtcagtggcgtgcgcgtcgtcaccaagcggcagccgcgccagtacatg
aatcgccgcggcgggttcaaccggcccctgccgccagagcggaaccgctga
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