Panicum virgatum (switchgrass): 120700403
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Entry
120700403 CDS
T07260
Name
(RefSeq) protein argonaute 4B
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120700403
03036 Chromosome and associated proteins [BR:
pvir03036
]
120700403
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120700403
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120700403
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120700403
microRNA pathway
RISC loading complex
120700403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120700403
NCBI-ProteinID:
XP_039840560
LinkDB
All DBs
Position
3K:complement(12798940..12807447)
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AA seq
906 aa
AA seq
DB search
MSSHDGDADELPPPPPVPPNVVPIKADDVLGESPPDKPVKPKKLPMARPGVGRKGQLIQL
YSNHFKVSVKSTEDFFFHYDVKLKYEDDQPVDGKVVGRKVIDKLQQTYHSELSNKDFAYD
GEKSLFTVGALPQVNNEFTVVMEEPSTGKTAANGSPEGNDSPGGGDKKRVRRSYQPKTFK
VELSLAAKIPMSAIGQAIRGEESENSLEALRVLDIILRQHSAKQGCLIVRQSFFHNNPSN
FVDLGGGVVGCRGFHSSFRGTQSGLSLNIDVSTTMIVRPGPVSDFLLANQKVDHPSKIDW
QKAKRALKNLRIKTIHGNTESKIVGLSEQNCKEQTFPLKLRDGSNDTVEITVYDYYMKKG
IELRYSGDYPCINVGKPKRPTYFPIELCNLVPLQRYTKALSTLQRTNLVERSRQKPDERM
AVLNDALQRSNYDSDPMLRVCGISVAPKFTQIEGRVLQAPKLKAANSEDILPRNGKWNFT
NRKLIQTCSVDKWAVVNFSARCDIRRLIPDLMRNASAKGIQMDEPFEVFEESPSMRRAPV
SRRVDDMFEQIKSKLPGAPRFLLCLLSERKNCEVYGPWKRKCLAEFGIVTQCLAPIRVND
PYLLNLLMKINAKLGGLNSLLQIEASRAIPHVSDVPTIILGMDVSHGHPGQDKPSIAAVV
SSRQWPNISKYRASVHTQSARQEMMTSLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVI
IFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQTGSPDNVP
PGTVVDSKVCHPRNFDFYMCAHAGMIGTTRPTHYHVLHDEIGFSADDMQEFVHSLSYVYQ
RSTTAISVVAPICYAHLAAAQVGSFLKFEEMSDASSSQGGHTSVGSAPVPELPRLHEKVR
SSMFFC
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcatgatggtgatgctgatgagttgccgccaccccctccggtgccaccgaat
gtggtgccgattaaagctgatgatgttttgggtgaatcgccaccagataaaccagtaaag
cctaagaaactaccaatggccaggcctggtgtaggacgaaaagggcaactaatccagctc
tattcaaatcactttaaagtctcggtgaagagtactgaagactttttctttcactatgat
gtgaagttgaagtatgaggatgatcaacccgttgatgggaaagtggtaggcagaaaggtg
attgataaactgcagcagacatatcactctgagctttctaacaaggactttgcatatgat
ggagaaaagagcctgtttactgttggtgctcttccacaagtaaacaatgagttcactgta
gttatggaggagccgtctactggaaaaactgctgccaatgggagccctgaaggaaatgac
agtcctggaggtggtgacaagaagagagtgaggagatcataccagccgaagactttcaaa
gtcgaattaagtttggcagcaaaaattcctatgagcgctattggtcaagccattagaggt
gaagaatcagagaactcactggaggctctccgtgttcttgatattatactgagacagcat
tctgcaaaacagggctgtcttatagtcaggcagtcatttttccataacaacccttcaaac
tttgttgatttgggtggtggtgttgtgggttgtcgtggatttcattcaagctttcgtggc
acacagagtggactttccctgaacattgatgtttcaacgacaatgattgtgaggccaggt
ccagtttctgattttcttcttgctaaccagaaagttgatcatcctagcaaaattgactgg
caaaaggccaagcgtgctctgaagaacttgagaattaagacaattcatgggaatacagaa
tccaagattgttggtcttagtgagcagaattgcaaggaacagacgtttccacttaaactg
agggatggtagtaatgatactgttgaaataactgtctatgactactatatgaagaaagga
attgaactgcggtattctggtgattatccctgtataaatgttgggaaaccaaagcgccca
acatattttcccattgagctgtgcaaccttgttcctttacaaagatacactaaagctttg
tctacgctacaaaggaccaacctagtcgagaggtctagacagaagcctgatgaaaggatg
gcagtccttaacgatgcgctgcaacgtagtaactacgattccgaccccatgctgagggtg
tgtggtatttcagttgctccaaagtttactcaaattgaaggaagggtcctgcaagccccg
aagctgaaagccgccaacagtgaagatatcttgccacgaaatggaaagtggaatttcacc
aataggaagctaattcaaacatgctctgtggataagtgggcggttgttaatttctcagca
cgttgtgatattcggagacttattcctgacctgatgagaaatgcatctgcaaagggaatt
caaatggacgaaccttttgaggtgtttgaagagagcccctctatgaggcgtgcccctgtg
tcaagaagagtggatgatatgtttgaacagataaaatcaaaacttcctggagctccaagg
ttcctcttgtgccttctctcggagaggaaaaattgtgaagtctatggtccttggaagaga
aagtgccttgctgaatttggtattgtcacacaatgtctagcaccaataagagtcaatgat
ccatacctgcttaatttgctgatgaagattaatgcaaagcttggcgggctgaactcgttg
ctgcaaattgaagcatctcgtgcaatacctcatgtgtctgacgtacccaccatcatcttg
ggtatggatgtgtcacatggtcatccaggacaagataaaccttcgattgctgcagtggtc
agctctcgtcaatggcctaatatctctaaatatagagcttcagttcacacccaatctgcc
aggcaagaaatgatgacctccttgtttaagccacggggaactgaagatgatggcctcatt
cgggaatcactgattgacttctatactagctctggaaagcgaaaacctgaccatgttatt
attttcagggatggagttagtgaaagccaatttacccaggtcataaacattgaactcgat
cagatcattgaggcatgcaagtttctcgatgagaagtggtcgcccaagttcactgtgatt
gtagctcagaagaaccatcataccaagttttttcagactggatctccagataacgttcct
ccgggtactgttgtggacagcaaagtgtgccatcctaggaactttgacttctacatgtgt
gcacatgctgggatgattggaacaacaaggccgacgcattatcatgttctccacgatgag
ataggcttctctgctgatgacatgcaggagtttgttcattcgctctcttatgtgtatcaa
aggagcacaacggccatctccgtagttgctccaatttgctatgcccatctcgccgcagcg
caggtcggttcgttcctgaaatttgaggagatgtcagatgcctcctccagccagggaggg
catacctcggtgggcagtgcacccgtgccagagctgccacgtctgcatgagaaagtcagg
agctctatgttcttctgctaa
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