Panicum virgatum (switchgrass): 120700409
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Entry
120700409 CDS
T07260
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
120700409
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
120700409
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GFIT
Motif
Pfam:
CBM-like
Rhamnogal_lyase
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
120700409
NCBI-ProteinID:
XP_039840567
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Position
3K:12845304..12848600
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AA seq
531 aa
AA seq
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MLRGSSGFYCYSIFEHAPEYPALNVSVARLAFKLNAAMFNYMAISDDIQRYMPSAADRDP
PRGVPLAYKEAVLLVDPVEPEFRGEVDDKYQYSLDNQDNSVHGWIGGSGDPAASASATGF
WVVTPSIEFKNGGPLKRELTSHTGPTSLAVFLGPHYVGRDMVIRFEEGESWKKVLGPVFI
YLNSGDPSRKRDLWEDAKARARAEVSRWPYTFPGSPDFAKPCERGSVTGRLWVRDAAAKQ
QQQPAAMAYVGLAAPGQPGSWARESKRYQFWTRATSDGRFSIGNVREGVYSLYAWVPGVL
GDYVHASSVTVTPASAVDAGDLVFEPPRSGPTLWEIGVPDQSAAEFHVPDPDPRYASRLF
LDRGTYRQYGLWERYAALYPDGDLVFTVGESNHSRDWFFAHVTRMVAPGKNNTVVPTTWQ
IRFHLDEVVAGGTYTLRVALAASHMASLQVRVNGGGDSGAGGAGAPPALLMGDNNAIARH
GIRGTEWNLDFRIEGRLLNQGDNTIHITQASALNQFVGVMYDYIRLEGPSM
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaggcagctccgggttctactgctactccatcttcgagcacgccccggagtac
ccagctctcaacgtctcggtggctcgcctcgccttcaagctcaacgccgccatgttcaac
tacatggcgatctcggacgacatccagaggtacatgccgagcgcggcggacagggacccg
ccccgcggcgtcccactggcgtacaaggaggccgtcctgctcgtcgaccccgtggagccg
gagttcagaggggaggtggacgacaagtaccagtactcgctggacaaccaggataactcg
gtgcacggatggatcggcggcagcggcgatccggcggcgtcggcgtcggcgacgggcttc
tgggtcgtcactcccagcatcgagttcaagaacggcgggccgctcaagcgggagctcacc
tcccacaccggccccacctccctcgcggtgtttctaggcccgcattacgtcggcagggac
atggtgatccggttcgaggagggcgagagctggaagaaggtgctgggccccgtcttcatc
tacctcaactccggcgacccgagccgcaagagagacctctgggaggacgccaaggcgcgg
gcgcgggcggaggtcagcagatggccctacaccttccccgggtcgccggacttcgcgaag
ccgtgcgagagaggctccgtcacggggaggctctgggtcagagacgccgccgccaagcag
cagcagcagcctgccgcgatggcctacgtcgggctcgccgcgcccggccaacctggctcc
tgggccagagagagcaagaggtatcagttctggacgagggccacctccgacggccgcttc
agcatcggcaacgtccgggaaggagtgtatagcctctacgcctgggtccccggggtcctc
ggcgactacgtgcacgcctcgtccgtgacggtgacgccagcgagcgccgtcgacgccggc
gacctcgtgttcgagcccccgaggtcgggccccacgctgtgggagatcggcgtcccggac
cagtcggcggcggagttccacgtccccgacccagacccgaggtacgcgagccggctcttc
cttgacaggggtacgtacaggcagtacggcctgtgggagaggtacgccgccctctacccc
gacggcgacctcgtgttcaccgtcggcgagagcaaccactccagggactggttcttcgcg
cacgtcacgaggatggtcgccccaggaaagaacaacacggtcgtgccgacgacgtggcag
atacgcttccacctggacgaagttgtggcgggcggcacctacacgctgcgcgtcgccctc
gcggcgtcccacatggccagcctgcaggtgcgggtgaacggcggcggcgacagcggagcc
ggaggcgccggcgcgccgccggcgttgctgatgggcgacaacaacgccatcgcacggcac
ggcatacgcggcacggagtggaacctggatttccgcatcgagggccgcctgctcaaccaa
ggggacaacaccatccacatcacccaggcgagcgccctgaaccagttcgtcggggtcatg
tacgactacatccgcctcgaaggcccttcaatgtag
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