Panicum virgatum (switchgrass): 120700428
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Entry
120700428 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120700428
09122 Translation
03013 Nucleocytoplasmic transport
120700428
03015 mRNA surveillance pathway
120700428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120700428
03041 Spliceosome [BR:
pvir03041
]
120700428
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120700428
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120700428
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120700428
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120700428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
120700428
NCBI-ProteinID:
XP_039840596
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All DBs
Position
3K:complement(12992673..12997022)
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AA seq
445 aa
AA seq
DB search
MAPPPSPPERSRRRATSASTVPGSETSFSSQSCFVLSRTAVLSIHPKVQFLLILHVGAEY
GHMVTLSIIMDQDTFTHWGAAPISFGSTSVQHECIPQAILGMDVICQAKSGMGKTAVFVL
SSLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIRKHKDLL
KNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD
KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDL
LDALDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRIL
VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLN
QVQERFEVDIKELPEQIDTSTYMPS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggctccgccgccaagcccaccggagaggtcgcgaagaagggctacgtcggcatccaca
gttccgggttcagagacttccttctcaagccagagctgcttcgtgctatccaggactgcg
gttttgagcatccatccgaaggtacagtttcttctgatactccatgttggagcagaatat
ggacatatggtaacactttccattatcatggaccaagacacttttactcactggggtgct
gctccaatttcttttggttccacatcagtgcaacacgagtgcatccctcaagcaattctt
gggatggatgtcatatgccaagcaaaatctgggatggggaagactgcagtttttgtcctt
tcatctctccaacagattgaccctgttgcgggtcaagtagcagcacttgtgttgtgccac
acaagggaactggcctaccagatctgccatgagtttgagaggttcagcaaatatctgcct
gaagttaaagttgctgtcttctacggaggagttcacatcaggaagcataaagatttgctg
aagaatgagtgccctcatattgttgttggcacacctggaaggatacttgctcttgccaga
gagaaggatctctcactcaagaatgtgcggcatttcatccttgatgaatgtgacaagatg
ctcgagtcacttgatatgcggagagatgtccaggagatcttcaaaatgactcctcatgat
aagcaagtcatgatgttttctgcaacactcagcaaggagatacgtcctgtatgcaagaag
tttatgcaagatccaatggaaatttatgtcgatgatgaggcaaaattgaccctccatggg
cttgtacagcactacataaaacttagcgaggcagagaagaacaggaaactgaacgatctg
ttggatgctcttgatttcaaccaagttgtgatattcgtgaagagtgttagcagagctgca
gaactgaataagttgctttgcgagtgcaacttcccttcaatctgcatccattctgggatg
acccaggaagaaagattaacccggtacaagaacttcaaggaaggccacaagagaattctg
gtggctactgatttagttggcaggggcattgatattgagcgtgtgaacatcgttataaac
tatgacatgcctgactctgctgatacatatttgcacagggttggaagggctggtcgtttt
ggcacaaaggggcttgcaattacctttgtttcctcggcctcggattctgatgttcttaac
caagtgcaagaaaggttcgaggtggacataaaggaactgcctgagcaaattgacacctcc
acatacatgccatcataa
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