Panicum virgatum (switchgrass): 120700438
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Entry
120700438 CDS
T07260
Name
(RefSeq) TATA-binding protein-associated factor BTAF1-like isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120700438
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120700438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TOR1L1_N
HEAT_ECM29
TPR_Trm732_C
HEAT_2
HEAT_GCN1
HEAT_MROH2B_C
Vac14_Fab1_bd
HEAT_GCN1_C
HEAT_GCN1_C_2
ARM_TBCD_2nd
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
120700438
NCBI-ProteinID:
XP_039840608
LinkDB
All DBs
Position
3K:13091903..13105457
Genome browser
AA seq
2046 aa
AA seq
DB search
MAQNSSRLHRLLTLLDTGSTQTTRFAAARQIGEIAKSHPQELNALLKKVSQYTRSKNWDT
RVAAAHAIGAIAENVKHTSLKDLCAFVEAEKHAFGLSYGSDDAGPLPRADTAATSDLAFG
SFDINKVLEFGSPLLASGGQEYDIANDNGKNPAERLARQKKNLRRRLGLDVCEQFMDVND
VIKDEDLLAQKKYWGSHVQNNGFNSFNTSRNIQQLVSTMVPRHHKQPNFRSRRLSARELN
MLKRKAKSNAKDHTKTVSEGDEITLKGPAPSNGATSDQSCAHNDALDITTDEDNLEYSEN
GRWPFQQFVDQLIHDMFDPIWEVRHGTIMALREILTHQGACAGVYFPDLSFPSAILDGKT
NFESLKRSHGIDLNDDVHVDHLEPAIKRHKKEQNPSESMYMDYDKEMVNSGHSKTEADLS
YVPTVSTCELSSAHVKVKPDFCVDDSTDPAKGDSSCKPVHEKLNSTSNPISHMHAPENSK
FMKMMKLAKYSYMKNWEFLQDCAIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAVLK
YMHPSLVCHTLNILLQMQRRQEWEVRHGSLLGIKYLVAVRQEMLKDLLDYVIHACKAGLE
DPDDDVRAVAAEALIPAADSLVRLNDQMLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEI
YSQPEMVPKMLGTAISGERGEFDLNILTQTAEQEERLASSENPYGLAALTPRLWPFMRHS
ITSVRRSAIRTLEKLLEVGNSRSLSGTVPSKFRPTSILGDALQVVFQNLLLESNDEILQS
SERAWKLLLQCPEKDLESAAKLYFSNWVQLATTPFGSALDSTKMFLPVALPRGSRSRAAA
KIRSAKLEHECTRTISFGSTGESTSHEKHFDIPSSISKIIVGADSDKSVTHTRVLTSMAL
GLFASKLPVGSWQFVLSPLANDLMSLSGVQRQVSSMVIVSWFKDLRSRDPVSVGTLLAFL
SSVKEWLLDLLTCSDPALPTKDSVLPYSELSRTYMKMCNEANNLLHSIDSCPVFKDYISG
LNLNVDVLGVDDAINFASKLLLPSESDLPSESERIVLNNIESAKQGLLSTSGYLKCVQNN
LHVTVCSLVASAVVWMSGLPSKLNPVILPLMAAIKREQEEVLQDKAADALAELICSCVGR
KPGPNDKLTKNLCTLTCTDATETPQAAIINSMQVVEDQNLLSIGKRFSSHRSRGHTASGS
EERSKMEGFISRRGSELAFKHLCEKFGQSLFEKLPKLWDCLTEFLKPVKIEDGPKDDTNI
AQLGRSYEDNDPQSLINNIQVVRSITPHLAEPLRPQLLSLLPCILGCVRHLHVAVRLAAA
RCITSMAKSLADDVMVLVIENVIPMLSDLSSVCARQGAGMLLSLLVQGLAVELVPYAPFL
VVPLLKCMSDPDGSVRQTVTHSFAALVPLLPLSKGASLPGGLSERLSSSAEDVQFLEQLL
DNSQIDDFKLNIDLSVELRRYQREGINWLAFLRRFKLHGILCDDMGLGKTLQASAIVASD
IAESRARNDEKDPTSLIICPSTLVAHWEYEIEKYIDSSIMKPLQYVGSSQDRVTLRSQFD
RFNIIITSYDIIRKDIDFLGNIPWNYCVLDEGHIIKNSRSKITSAVKQLKAQHRLILSGT
PIQNNVLELWSLFDFLMPGFLGTEKQFQATYGKPLLAAKDSKCSAKDAEAGILAMEALHK
QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSLLQLKLYDKFSSSNAKEEISTIVKANESE
ESAPQPKATRHVFQALQYLLKLCSHPLLVTGENPPDHLVDLLKEIGVGSGGELHELHHSP
KLVALQEILQECGIGSEISSPDASTAIGQHRVLIFAQHKAFLDIIEKDLFQSHMRSVTYL
RLDGSVEAEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMKDLQ
AMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENSSLKTMNTDQLL
DLFTSTPASRKASVLPWGLSNDQSKDSKKSGGKGLKSILNGLDELWDQSQYADEYDLNQF
LAKLNG
NT seq
6141 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaattcgtcccgtcttcaccgcctcctcacattactggacacaggttcgaca
caaacgacaaggtttgcggctgcacgccaaattggagaaattgccaagtcccatccccag
gagctaaatgcattgcttaaaaaggtttctcagtacactcgtagtaaaaattgggataca
agggttgcagcagctcatgcgattggtgcgatagcagagaatgtcaaacacacatcatta
aaggacctatgtgcttttgtggaagcagaaaaacatgcttttgggttgtcttatgggagt
gatgatgctggtccattgccacgcgctgatactgcagcaacatcggatcttgcttttgga
agctttgacataaacaaggtattggaatttggatctcctttattggcatcaggtggacag
gaatatgacattgcaaatgacaatggcaagaatccagcagagcgccttgctcgccaaaag
aaaaatcttcggcgccgtttaggactggatgtatgtgagcagtttatggatgttaatgat
gttatcaaagacgaggatcttcttgcccaaaaaaaatattggggttcacatgtacagaac
aatggatttaattcattcaatactagtcgtaatatccagcaattggtttccaccatggtt
cctaggcatcacaagcagcctaactttcgctctaggcgattaagtgccagggagctcaat
atgctgaagcgtaaagcaaagagtaacgcgaaagatcatacaaagactgtatctgagggg
gatgagattacactaaaaggtcctgcaccatctaatggagctacttctgaccaaagctgt
gctcataatgatgcattggatataactacagatgaagacaatctggagtacagtgaaaat
gggagatggccttttcaacaatttgtggatcagcttattcatgatatgtttgaccctatt
tgggaagttcgccatggcaccattatggctttaagggaaattttgacacatcaaggtgct
tgtgctggagtatattttcctgatctgagctttccttctgctattttggatggtaaaacc
aactttgagtcccttaaaaggtcgcatggtattgatctaaacgatgatgttcatgtggac
cacctcgagccagccataaagaggcataagaaagaacaaaatccttctgaatctatgtat
atggactatgataaggagatggttaacagcggtcattcaaaaacagaggcagatctgagc
tacgtgcctactgtatcaacttgtgaattaagttctgctcatgtaaaagtcaagcctgat
ttctgtgttgatgattcaaccgaccctgctaaaggggattcatcatgtaaaccagtacat
gaaaaactcaactccacatcaaatccaatttctcatatgcatgctccagaaaattcaaaa
ttcatgaaaatgatgaaattagccaaatattcttatatgaagaattgggaatttcttcag
gattgtgcaattcgcttcctttgtgtactttcactggatcgctttggtgattatgtatca
gatcaagtggttgccccagttcgtgaaacctgtgctcaagctcttggtgctgtgctgaag
tacatgcacccttctttagtatgtcatactctgaatatcttgctgcaaatgcagcgcaga
caagagtgggaagtacgtcatgggagcctccttggcattaaatacttggttgctgttcgg
caggaaatgcttaaagatttgcttgactatgtcattcatgcttgtaaagctggtctggag
gatcctgatgatgatgtccgagcagtggctgctgaagccctgatcccagctgctgactca
ttagttagactgaatgatcaaatgctgcattcaattgtgatgttgctttgggatatattg
cttgaccttgatgatctaagcccatctacgagcagtgtaatgaacttgttagcagaaata
tattcgcagccagagatggtcccaaagatgctcggcacagcaatttcaggggaaagggga
gaatttgatctaaacatattaactcagactgctgagcaagaagagagattggcatctagt
gagaacccttacggtctagccgcactgacacctcggctgtggccgtttatgagacatagt
attacttcagttcggcgttctgccatacgcacactggagaagcttcttgaagttgggaac
agtaggagtttatctggaactgtcccgtctaaattccggccaacatcaatattaggagat
gcactgcaggttgtcttccagaacctacttttggagtcaaatgatgagattcttcagtcc
tctgaaagagcttggaaacttctacttcagtgccctgagaaggaccttgaatctgctgcg
aagctatattttagtaattgggtacaacttgctaccactccatttggctcagcattggat
tcaacaaaaatgtttttgccagttgcccttccccgaggaagtcgttcaagagctgctgca
aagatcagatctgctaagctagagcatgagtgcacaagaacgatctcatttggttctaca
ggggaaagtacttctcatgaaaaacattttgatattccctcaagtatttctaagataatt
gttggtgctgattctgacaaatctgttactcatacacgagttcttacatcaatggcactt
gggctttttgcatctaagttgcccgtaggctcatggcaatttgttctaagtccactagca
aatgatctcatgtctctctcaggagttcagagacaggtgtcttcaatggttattgtttct
tggtttaaggatctgagaagtagagatcctgtatcagtgggtacattactagctttccta
tcttctgtgaaagagtggctactggacttgttgacctgctctgatccagcattacctaca
aaagattctgtgcttccatattctgaactttcaaggacatacatgaagatgtgcaatgaa
gccaataatttgctccactcaattgattcttgtcctgttttcaaagattatattagtggc
ttaaaccttaatgttgatgtgctgggtgttgatgatgctatcaactttgcatcaaagctt
ttgttaccatctgaatccgatcttccttcagaaagtgaaagaattgtcctgaataacata
gaatcagcaaaacaaggtctattgtctacatcaggctacttgaaatgtgttcagaacaat
ttgcatgtgacagtttgttctttagtggcatctgctgtagtctggatgtcaggtttgcct
agcaagttgaacccagtcattttacctttaatggctgccataaaaagagaacaggaagaa
gtacttcaggataaagctgctgatgcacttgccgagctcatttgtagctgtgttggccgc
aagcctggccctaatgacaagctaaccaagaatctctgcacattgacatgcactgatgct
actgagacacctcaagctgcaataattaactcaatgcaggttgttgaggaccagaattta
ctgtcaattggaaagcgttttagcagtcataggtccaggggtcatacggcttctggtagt
gaagaaaggtcaaaaatggagggctttattagtcgacgtggatccgagttagctttcaag
catctctgtgagaaatttggacagtcattgtttgaaaaacttcccaaattatgggattgc
cttactgagtttcttaaacctgtaaaaatcgaagatggtccaaaagatgatacaaatatt
gcacagctgggcagatcgtatgaggataacgatccacagtcgctcataaataatatccag
gttgttcgttcaattacgcctcacttggctgagcccttaaggcctcaactgctaagtctc
cttccctgtattcttgggtgtgttcgtcatcttcatgtggctgttagacttgctgctgca
aggtgcatcacatccatggcaaagtcattggctgatgatgtgatggttctggtgatagag
aatgtcattccaatgttgtctgatttatcttctgtttgtgcaagacaaggggctgggatg
cttttgagccttcttgttcagggtttggctgtggagttggttccttatgctccgttcctt
gttgttccacttctgaagtgtatgagcgacccagatggttctgttaggcagactgtgact
cacagttttgctgctcttgttcctttgctgccattatcaaagggtgcttcattaccaggt
ggactaagtgaacgcttatctagcagtgctgaagatgtgcagtttctggaacagctcctt
gacaactcccaaattgatgatttcaagctcaacattgatcttagtgttgaattgcgaagg
tatcagcgagaagggatcaactggctcgcattccttagacgatttaagttacatggaatt
ttgtgtgatgatatggggctcggtaagacactccaagcatctgctatcgtagcaagtgac
attgccgaatcacgtgcacggaatgatgagaaagatccaacatctttgataatatgccct
tctacattagtggcccactgggaatatgaaatagagaagtacatagacagctctatcatg
aaacctcttcagtatgttggttcttcacaggacagagtcacactccgtagtcaatttgat
aggtttaacattatcataacatcatatgatattatacggaaggacatcgattttcttggg
aatatcccttggaactactgtgttctggacgaagggcacataatcaaaaactcaagatct
aaaataacgtctgctgtgaaacagctgaaagcacaacaccgccttatcttgagtggcact
ccaatccagaataatgtgttggagctatggtctttatttgacttccttatgcctgggttt
cttggtacagaaaaacaattccaagctacatatggaaaaccattactagcagccaaagat
tctaaatgttcagcaaaggatgctgaagctggtattcttgcaatggaagcgctgcataag
caggtcatgccatttctactgagaagaacaaaggatgaagttttgtctgatcttccagag
aagattatccaggatcgatattgcgatctcagtctgttgcaactcaaactttatgacaaa
ttctccagctccaatgcaaaagaagagatttcaactatagtgaaagcaaatgaatcggag
gaatctgcacctcagccaaaggcaactcgtcacgtgtttcaggcattgcaatacttatta
aaactgtgcagccatcctttacttgtaactggagagaaccctcctgatcatcttgttgat
cttctgaaagaaataggtgtgggatccggcggtgagcttcatgagctccaccactcacct
aagcttgttgctcttcaagaaatacttcaggagtgtggtatagggtcagaaatatcaagt
cctgatgcttcgacggctattgggcaacacagagttttgatttttgctcagcataaggct
tttcttgacattattgagaaggacctatttcaatctcatatgagaagtgtgacatattta
cggctggatggctctgttgaagctgagaagagatttgaaattgttaaagcattcaattca
gatccaaccattgatgtacttctgttaacaacccatgttggcgggcttggcttgaatttg
acatctgctgacacattggtcttcatggaacatgattggaacccaatgaaggatcttcag
gcgatggacagagcacaccgtttgggtcaaaggaaagtggtgaatgttcaccgtctcatc
atgcgtggtacccttgaggagaaggtgatgagtctccagaggttcaaggtgtcagttgcc
aatgcggtcatcaatgctgagaactccagcttgaagaccatgaacactgaccaactgctt
gatctgttcacatctacccctgcttcaagaaaagcgtcggtccttccatggggcttgagt
aatgaccagagtaaagattcaaagaaatctggtggcaaaggcttgaagtccattcttaat
ggattggatgagctttgggatcagtcacagtatgctgacgagtatgatctgaaccagttc
cttgcgaagctcaatggctga
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integrated database retrieval system
