KEGG   Panicum virgatum (switchgrass): 120700452
Entry
120700452         CDS       T07260                                 
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120700452
  09124 Replication and repair
   03420 Nucleotide excision repair
    120700452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120700452
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120700452
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     120700452
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      120700452
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120700452
SSDB
Motif
Pfam: Beta-prop_RSE1_1st CPSF_A Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 120700452
NCBI-ProteinID: XP_039840630
LinkDB
Position
3K:complement(13221020..13230403)
AA seq 1090 aa
MSVWNYVVTAHKPTSVSHSCVGNFTSPNQLNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATIELFRPHNETQDFLFIATERYKFCVLQWDAEKSELLTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLHGCVKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC
NANATFKAIPIKQSIIRAYGRVDPDGSRYLLGDNAGTLHLLVLTHERERVTGLKVEYLGE
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADASGSFVEVLERYVNLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSLRVVRSGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAIHDLLIQVTANSVRLVSCTSREL
VDQWNAPAGFSVNVASANASQVLLATGGGHLVYLEIRDAKLVEVKHAQLEHEISCLDLNP
IGENPQYSSLAAVGMWTDISVRIFSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
LGDGNLFSFLLNASTGELNDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
LLYSNVNLKEVNHMCPFNTAAFPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
HQEQSRTLAFCSFKYNQTSMEESETHYIRLLDHQTFEFLSTYPLDQYECGCSIISCSFAD
DNNVYYCVGTAYVIPEENEPTKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
INQKIQLYKWMLRDDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE
SAIEERARDYNANWMTAVEMLDDEAYIGAENSYNLFTVRKNSDAATDDERARLEVVGEYH
LGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTINGVIGIIASLPHDQYMFLEKLQSTLVK
FIKGVGNLSHEQWRSFHNDKKTAEARNFLDGDLIESFLDLSRSKMEEVSKAMGVPVEELS
KRVEELTRLH
NT seq 3273 nt   +upstreamnt  +downstreamnt
atgagcgtgtggaactacgtagtcacggcgcacaagccgaccagcgtcagtcactcctgc
gtcggcaacttcaccagccccaaccagctcaacctcatcatcgcgaaatgtacccgcatt
gagatccatttgcttactcctcagggccttcagcctatgcttgatgtccctatatacgga
aggatcgcgacgattgagcttttccgccctcataatgagactcaagattttcttttcatt
gctacggagaggtacaaattctgtgttctgcaatgggacgcagaaaaatcagagctcctc
accagagccatgggtgatgtttctgatcgcattggccgtcctactgataatggacagatt
ggaattatcgaccctgactgcagacttattggtcttcacctctatgacggcttatttaag
gttataccatttgacaacaaaggacagctgaaggaagctttcaatatcagacttgaagaa
cttcaagtactggacatcaagtttctgcatggttgtgttaaacctactattgttgtcctc
taccaggataataaagacgcgaggcatgttaagacatatgaagttgcactgaaggacaaa
gattttgttgagggtccttggtcccaaaataatttagacaatggtgctggtttgttaata
cctgtaccagctccacttggtggcgtgataattattggcgaggagacaatagtttactgc
aatgccaatgctacatttaaagctataccaataaaacaatctatcataagagcttatgga
cgggttgacccagatggttctcgatatttactcggtgataatgcaggaactctgcattta
cttgtccttacccatgaacgagaaagggttactggtttgaaagtagaatacttgggagag
acttcaatcgcatcatcaatttcatatctcgataatggtgttgtttatgttggttcacga
tttggcgattcacagctggtaaaactgaacctccaagctgatgcaagtggttcatttgtt
gaagttctggaacgttatgtgaatcttggacctattgtggacttctgcgtggttgacctt
gataggcagggtcagggtcaggtggtcacttgttctggggcatttaaagatggttccctt
cgcgtggttcggagcggtatagggattaatgagcaggcttcagtagaactccaaggtatc
aaaggattatggtcattgaaatcttctttcaatgatccttatgacatgtacctagttgtg
agctttataagtgagacacggttcttggcgatgaacatggaagatgaactagaagaaact
gagatagaggggtttgatgcgcaaacacagaccctgttttgtcaaaatgcgatccatgat
cttctcatacaggttactgctaattctgttcggttagtcagttgcacctctcgggagcta
gtggatcaatggaatgcacctgcaggattttcagtcaatgttgcttcagctaatgctagt
caggttctgctggcaacaggtggtggccatcttgtttacctagaaattagggatgctaag
cttgttgaagtgaagcatgcacagttagagcatgagatttcttgtctcgatttgaaccca
attggggagaatccacagtatagttccctagctgctgttgggatgtggacagatataagt
gttagaatattttcacttccagatcttgaattaataaggaaggaaaatttgggtggagaa
attgttcctcggtctgttctgctgtgcaccttggagggggtttcgtatttgctttgtgct
cttggagatggtaacctgttcagttttctgctgaatgcaagtacaggtgaactcaatgat
agaaagaaggtttcccttgggacccaaccaatcagccttcgtacattctcatcaaagggt
accacccacgtgtttgcttcatcagataggccaactgtcatctatagcagcaataagaaa
cttctctatagcaatgttaatttgaaagaagttaatcatatgtgccctttcaatacagcc
gcttttccagacagccttgcaattgctaaagaaggtgaactctcaattggaacaattgat
gatatccaaaaacttcacatccgtacaatcccccttaatgaacaagcacggcgcatttgc
caccaggagcaatcaaggacactagcattttgcagtttcaagtacaaccagactagtatg
gaggaaagtgagactcattacatccgtctgttagatcatcagacttttgagttcctgtct
acatatcctctagatcaatatgaatgtggctgctccatcattagctgctcatttgcggat
gataataatgtctattactgtgttggaactgcatatgttatacctgaggaaaatgaacca
acaaagggccggatccttgtatttgctgttgaagatggaaggttgcagttaattgtagag
aaagaaactaaaggagcagtttattcgctgaatgcattcaatgggaaattgttggctgct
atcaaccagaagattcagttatataagtggatgctacgcgatgatggttcacacgagctg
caatctgagtgtgggcaccatgggcacatactggccttgtatactcaaacccgtggtgac
ttcattgtggttggtgatctgatgaaatcgatatccttgctggtctacaagcatgaggaa
agtgcgatcgaagagcgtgctagggattacaatgcaaactggatgactgcagttgagatg
cttgatgatgaagcctatatcggggcggaaaatagttataacctattcactgtacgcaag
aacagtgatgcagccacagatgacgaaagggccaggctggaggttgttggggagtaccat
ctcggagagtttgtgaataggttccgccatggttcactcgtaatgcgccttccggactca
gagatagggcagattcccacagtcatctttggcacaataaatggggtaattggcatcatc
gcctccctcccacatgaccagtacatgtttctagagaagctccagtccactcttgtgaag
ttcataaagggtgtcggaaacctgagccatgagcaatggcgttcgttccataatgataag
aagacagccgaggctcggaacttccttgatggcgacctgattgagtcattccttgacctt
agcaggagtaagatggaggaggtgtccaaggctatgggtgttcctgtggaggagctgtcc
aagagagtggaagagttgactaggctgcactag

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