Panicum virgatum (switchgrass): 120700476
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Entry
120700476 CDS
T07260
Name
(RefSeq) RNA polymerase sigma factor sigC-like
KO
K03093
RNA polymerase sigma-I factor
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120700476
Transcription machinery [BR:
pvir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
120700476
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Motif
Other DBs
NCBI-GeneID:
120700476
NCBI-ProteinID:
XP_039840668
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Position
3K:complement(13417961..13420849)
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AA seq
566 aa
AA seq
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MGLQMMQGRPGASCCPSSSSSSSSWMMAAHPPKQSPHPLGGRSISSESLAALALHLVLKR
RKYHGRDIATGFASSSSVLQITENKSSSLTKPKAERKVLDDALDRNLQYDWMDEETLFWL
DSNYTDSNLQFGLLMKNLQALETSLAGKDLKMLEKDILVHIEQLGALGSFNASMSMATLD
TLTQTSHEPDLSLLDKVIRFDPETPLKEQDAEVIVRSGKSQERKQKRMRASEKASKISVK
INPRRSKKSRKSSSSQFISEWKNYPGRRRTIVREQSSLLVTIKECANLEKIRDDMVKEGE
EVSYQRWAEAAGVDEAELKSRLHAGYCCRERLIVTTEWLVRYIARTYTGMGTAFDDLLQA
GKMGVLDGAEKFDSRKGCKFSTYVKYWIRKGMLALLAENSGVTLLPARMECIIRKVKEAR
RAIRYSQGRNPSDSEIAAVVGVSVANVRLARKCSRKVLSLYSEIGIGQNAKFTEVIPDPS
LEAADEAIFRAQLRERLLVVLERLPAREGRVLKLRHGLEDGRCMSLEQIGRIYRVSKEWI
RKIEKSAMAKLRNQDVRSELDDFCIF
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttcagatgatgcaaggcaggcctggcgcctcgtgctgtccatcgtcctcgtcg
tcttcctcctcgtggatgatggcggcccatcccccgaaacagtctccccatccattaggg
ggaaggtccatttcttctgaatcccttgcagcactggccttgcatctcgtgctaaagcgc
cgcaaataccatggccgggacattgcgaccggttttgcatcttcatccagtgtgcttcag
atcacagagaacaagtcaagcagtttgacgaaacccaaggcagaaaggaaggtccttgat
gacgctcttgacagaaatttacagtatgactggatggatgaagagacattattctggctg
gatagcaattacacagatagcaatctacagtttggcttgttaatgaaaaaccttcaggca
ttggagactagtttggccggcaaagacttgaaaatgctggaaaaggatatccttgtacat
attgaacagcttggagctctgggatcgtttaacgcgtctatgtccatggccaccctagac
accctaacacagacctcacatgaaccagatttgtctctgcttgacaaagtcatcaggttt
gacccagagactcctctgaaggagcaagatgctgaagtaatcgttcggagtggcaagagt
caagagaggaaacagaaaagaatgagagcatcagaaaaggcctccaagatctctgtgaag
ataaatccaagaagatcgaagaaatcgcgcaagtctagtagtagtcagtttatatccgag
tggaaaaattatccgggcaggagaaggaccattgtacgtgaacaatcatcattgttagtt
accatcaaggaatgtgcgaaccttgagaagatcagagatgatatggtaaaggagggggag
gaggtgagctatcagaggtgggcagaggcagctggagttgatgaggcagagctgaagagc
aggctgcatgcggggtactgctgccgagagaggctgatagtgaccaccgagtggctcgtc
cggtacattgcaagaacatacaccggaatggggacggctttcgacgatctacttcaggct
gggaagatgggcgtccttgatggcgccgagaagttcgacagccggaaggggtgcaaattc
tccacatacgtcaagtactggatcaggaaagggatgctagctctgcttgccgaaaattca
ggagtcaccctgctgccggcaagaatggagtgcatcatccgcaaggtgaaggaggcgcgg
cgcgcgatccggtacagccaagggaggaacccgtcggattcagagatcgccgccgtggtc
ggcgtgtccgtggccaacgtcaggctggcgcgcaagtgctctcgcaaggtcctgtcgctc
tactccgagatcgggatcggtcagaatgcaaagttcacggaggtgatcccggacccgtct
ctggaggccgccgacgaggccatcttccgggcgcagctgagggagaggctgctggtggtg
ctggagaggctgccggcgcgggaagggcgcgtgctgaagctgcggcacgggctggaggac
ggcaggtgcatgtcgctggagcagatcggccgcatctaccgcgtgtccaaggagtggatc
aggaagatcgagaagtcggcgatggccaagctcaggaaccaggacgtgcgcagcgagcta
gacgacttctgcatcttctag
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