Panicum virgatum (switchgrass): 120700656
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Entry
120700656 CDS
T07260
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120700656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120700656
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
120700656
Prokaryotic type
Archaeal type
TFB
120700656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
HTH_Tnp_ISL3
HTH_36
Motif
Other DBs
NCBI-GeneID:
120700656
NCBI-ProteinID:
XP_039840837
LinkDB
All DBs
Position
3K:17013146..17014099
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AA seq
297 aa
AA seq
DB search
MEYSAPINTSAGAEEAALLRKRGQGAVAPPPGLPRTAEEGPAPGLKRMRGTVTLSLRTPE
GPATPPAAFSLEAEEEEPAMRGAAQARGRAALEGGCRAIADMAVRLGIGPGVRDRALEVY
RGLEEGKGRAHHYYTKGAGRSGDALYAACLYVACRSAGAPRTFKELAAATRGGAASRKDI
GKLLALIRKRFGDDAGGEAMGIGVVRAADYMERFGSLLGMGEDEVRAVQEAARRMQDQLD
VRRNPDSTAAAIIYMAMQRRTGAGRSIRDVSAATGVADNTIKQAYRELYPHAQLLFG
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggagtattcggcgccgatcaacacgagcgccggggccgaggaagccgccctgctgagg
aagcgggggcagggcgccgtcgctccgcctccggggctgccgaggacagcggaggaggga
ccagcacccggcctcaagaggatgcgcggcaccgtgaccctctcgctgaggacgccggag
ggacccgcgacgccgcccgcggccttctcgctggaggcggaggaggaggagcccgcgatg
cgcggggccgcgcaggcccgcgggagggcggcgctcgaagggggctgccgcgccatcgcc
gacatggcggtccggctcgggatcgggcccggcgtgcgggaccgggccctggaggtgtac
cgggggctggaggagggcaagggcagggcgcaccactactacaccaagggcgccgggcgg
agcggcgacgcgctgtacgcggcgtgcctctacgtggcgtgccgcagcgcgggcgcgccg
cggacgttcaaggagctggccgcggcgacgcgcggcggcgcggcgtccaggaaggacatc
ggcaagctcctcgcgctcatcaggaagcggttcggggacgacgccggcggggaggccatg
ggcatcggcgtggtgcgcgcggccgactacatggagcgcttcggctcgctgctcgggatg
ggggaggacgaggtgcgcgcggtgcaggaggcggcgcggaggatgcaggaccagctcgac
gtgcggcgcaaccctgactccaccgcggccgccatcatctacatggccatgcagcggagg
accggcgccgggaggtcgatccgggacgtgtccgcggccaccggcgtcgccgacaacacc
atcaagcaggcgtacagggagctgtacccgcacgcccagctgctcttcggttga
DBGET
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