Panicum virgatum (switchgrass): 120701007
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Entry
120701007 CDS
T07260
Name
(RefSeq) polygalacturonase ADPG2-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Module
pvir_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120701007
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
120701007
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
120701007
NCBI-ProteinID:
XP_039841116
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Position
3K:complement(49980931..49982295)
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AA seq
454 aa
AA seq
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MASRTLLATACLLVLLLLTLGGAPVEARARRGPRWAPRRTPESSSVDGYATTATFDVGSF
GAAGDGTTDDTAAFQKAWAQACSSAQPAVVLVPAGRSYLLGETSLSGPCKSRVTFRLDGT
LVAPEDKSGWGKPGSLPRWIVFRGVDGLTVTGEGALDGRGESSWRNSCRTNPAMPCTVAP
SALTFASCDRLAVDGITLLNAPQIHLWVERCRDATLSGLTIASPGDSPENDGIHVARSDG
VRILGARIATGDDCLSVATGTANLYAAGIECGPGHGISIGSLGRGGSRAEVSNVTVDGAS
VSGTMFGARIKTWQGGSGFVRGVRFLNMAMDRVKYPILIDQSYCTRPHPNDTAACDRQQQ
SGRSSAVEVSDVVFGNIWGTTVARDAIRLHCSEAFPCRDVVLRDVQLRTRKGGDKNAATS
SCENAVLAESSNVSPAPCSSAATKKNFVRRRVHH
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgcgcacgctcctcgccacggcttgccttctcgtcctgctgctcctgacgctc
ggcggcgctcccgtcgaggcacgtgcacgtcgagggccacggtgggcgccgcgccgcacg
ccggaaagtagtagtgtcgatggttacgccacgacggccacgtttgacgtcggcagcttc
ggagccgccggcgacgggacgacggacgacacggccgcgttccagaaggcgtgggcccag
gcctgctcctcggcgcagcccgccgtcgtgctcgtccccgccgggaggagctacctcctc
ggggagaccagcctgtccgggccgtgcaagtccagggtcacgttccggctcgacggaacg
ctggtggctccggaggacaagtcgggctggggcaagccaggtagcctcccccgctggatc
gtcttccggggcgtcgacggcctaaccgtcaccggcgagggcgccctggacggccggggc
gagtcctcgtggaggaactcgtgccggacgaaccccgcgatgccgtgcaccgtcgcgccg
tcggcgctcaccttcgcgtcgtgcgaccgcctcgccgtggacggcatcaccctgctgaac
gcgccgcagatccacctgtgggtggagcgctgccgcgacgcgacgctgtccgggctcacc
atcgcgtcgcccggcgacagccccgagaacgacggcatccacgtcgcgcgcagcgacggc
gtgcgcatcctcggggcccggatcgcgaccggcgacgactgcctgtcggtggcgacgggc
acggcgaacctgtacgccgccgggatcgagtgcgggcccgggcacgggatcagcatcggg
agcctgggcaggggtggcagcagggccgaggtgtccaacgtcaccgtcgacggggccagc
gtgtcgggcaccatgttcggggcccggatcaagacgtggcaggggggcagcgggttcgtc
cggggcgtcaggttcctgaacatggccatggacagggtgaagtaccccatcctgatcgac
cagagctactgcaccaggccgcaccccaacgacacggcggcgtgcgaccgccagcagcag
agcggccggagctccgccgtcgaggtcagcgacgtcgtgttcggcaacatctggggcacc
accgtcgccagggacgccatcaggctccactgcagcgaggcgttcccgtgccgcgacgtc
gtgctcagggacgtccagctcaggaccaggaaaggcggcgacaagaacgccgccacgagc
agctgcgagaacgccgtgctggccgagtctagcaacgtttctccggcgccctgctcgtcc
gcggcgaccaagaagaattttgttcggcggcgagtccaccactag
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