Panicum virgatum (switchgrass): 120701118
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Entry
120701118 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase EL5-like
KO
K10663
E3 ubiquitin-protein ligase ATL4 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120701118
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120701118
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120701118
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING-like
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
120701118
NCBI-ProteinID:
XP_039841209
LinkDB
All DBs
Position
3K:complement(59990440..59991771)
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AA seq
443 aa
AA seq
DB search
MAPPPAPLAAEDATPPPPSLKSALLITGGLLLFAIAAIVLLRCLLRRWASSSSRPGAGRM
AEVEQGEAARRTGAAGRELAEAGEATRRTAAAGREQVEAEAGAATRIAAEGRRGEAPSAR
ERQEVELRGAGAGDGGMERLIASLPLFTMASALAALPKNSPDCAVCLAAFEPDAGLRLLP
ACRHAFHDACIGAWLRTNPVCPICRSAVAFPLPPLPAAAAGQEPLGSRAGSRSFRVELGS
VSNRRSSCDDPRRTYSLGGSFDYRVDEEVEAIVSRIVRPAAAAAARPSAAAPAAPGEALA
EEVGSRGWLGEYLDRVAASASSLSGRWSGRLSHGRRSHSLRHDDSCSRDPAAKSATPAAV
AAPGEEAPAEAAGSRGRPGERRDRDNLAPSAPSLSGRWSRRWSQGHRRDESRRWDPEAAC
RTPREEEEREPALVALGRWIFGF
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgcccgcgcccctggcggccgaggacgccaccccgccgccgccgtcgctc
aagtccgcgctcctcatcaccggcggcttgctcctgtttgccatcgccgcgatcgtgctg
ctccgctgcctcctccgccgctgggcgtcgtcgtcgtcgcgtccgggggcggggcgcatg
gcggaggtggagcagggagaggcggcgaggaggaccggcgcggcggggagggagctggcg
gaggcaggggaggccacgaggaggaccgccgctgcggggagggagcaggtggaggcggag
gcaggggcggcgacgaggatcgcggcggaggggaggcggggcgaggcgccttcggcgagg
gaacggcaggaggtggagctgcggggggcaggcgcgggcgacggcggcatggagcgcctg
atcgcgtcgctgcccctgttcaccatggcgtcggcgctggcggcgctgccgaagaactcc
cccgactgtgcggtctgcctcgcggcgttcgagcccgacgccgggctgcggctgctcccg
gcgtgccgccacgcgttccacgacgcctgcatcggcgcgtggctccgcaccaacccggtc
tgcccgatctgccgcagcgccgtggcgttcccgctcccgcccctccccgccgccgccgcg
ggccaggagccgctcggctcgcgggcgggcagcaggagcttccgcgtcgagctcggtagc
gtcagcaaccgccgatcctcctgcgacgacccccgccgcacctactcgctcggcggctcc
ttcgactaccgcgtcgacgaggaggtcgaggccatcgtgtcccgcatcgtccgccccgcg
gcggcggcggcggccaggccgagcgccgcggcgccggctgcccccggcgaagctctggcg
gaggaggtggggtcccgcgggtggctgggcgagtacctcgaccgcgtcgccgcctcggcg
tcgtccctctccgggcggtggagcgggcggctcagccacggccgccgcagccacagcctc
cgtcacgacgactcgtgtagccgggatccggcggccaagtcggcgacgccagccgcggtg
gcagcccccggcgaagaagccccggcggaggctgcaggttcccgcgggaggccgggagag
cgccgcgaccgcgacaacctcgccccttcggcgccgtccctctccgggcggtggagccgg
cgctggagccagggccacaggcgcgacgagtcccggcggtgggacccggaggcggcgtgc
cgcacgccgcgggaggaggaggagcgggagccggcgctcgtggccctgggccggtggatc
ttcggcttctag
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