KEGG   Panicum virgatum (switchgrass): 120701215
Entry
120701215         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 10
  KO
K04506  E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120701215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120701215
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120701215
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   SINA (Seven in absentia) proteins
    120701215
SSDB
Motif
Pfam: Sina_RING Sina_ZnF zf-RING_5 zf-C3HC4_3
Other DBs
NCBI-GeneID: 120701215
NCBI-ProteinID: XP_039841285
LinkDB
Position
3K:10257850..10259658
AA seq 422 aa
MTGDEEHGSDGPVRREREQEFSDGSDGYGGAEDGQEEEEDRNESEGEQEYSDGSEEGEQQ
AHDIQEDEEELPQPQPHGEEEQQQRSDGSGGDNGVEDEQQVGEEQQQEEEAPQAHGADVA
AVAVAGGDDDLAAAPRPSSPAPSLRSESSSVVVVGEMTVDRTHALDCGICFLPLKPPIFQ
CDVGHVVCSPCRDKLAAAGRCHVCRDPTGFRRCHAMEQMVDSVRVACPHAAHGCADRPAY
HDRGRHARECAYAPCRCPGGGSGCGFVGPAPALAEHAAADHGWPCAAEAAAGASFGVDLR
DGFNLLTAVRGGAQNLLLLNVASTPFGRAISVVRVLPQVASTGSSSAPEASGAKCELELM
YWRYKGFLREHCLMSRFEVPSMDPSDALPDPSASFQFFVPKSVRGHDDAGLHVNVVIAIN
SS
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaccggagatgaggagcacggttcggacggtccggttcgccgcgagagggaacaggag
ttctcggatggatctgacggttacggtggagcggaagatgggcaggaggaggaggaggac
cggaatgaaagcgagggagaacaggagtactcggatggatctgaggaaggtgagcagcag
gcgcatgatattcaggaagacgaagaggaactaccgcagccgcagccgcacggcgaggag
gagcagcagcagcgaagtgatggatccggtggtgataatggcgtggaggacgagcagcag
gtaggagaagaacagcagcaggaagaagaggcgccgcaggcacatggcgcggacgtcgcc
gccgtcgctgttgctggtggggacgatgacctcgcggcggcgccgcggccgtcatcgccc
gcaccgtcgctgcgctcggagagttcatcggtcgtcgtcgtcggggaaatgacggtggac
cgcacccacgcgctcgactgcggcatctgcttcctcccgttgaagcctcccatcttccag
tgcgacgtggggcacgtggtgtgctcgccgtgccgcgacaagctggcggcggccggccgg
tgccacgtctgccgggacccgaccggcttccggcggtgccacgccatggagcagatggtg
gactcggtccgcgtcgcttgcccgcacgccgcgcacggctgcgccgacaggccggcgtac
cacgaccggggacgccacgcccgcgagtgcgcgtacgcgccctgccgctgccccggcggc
ggcagcggctgcggcttcgtcggccccgcgccggcgctcgctgagcacgccgccgccgat
cacggctggccgtgcgccgccgaggccgccgccggtgcctccttcggcgtcgacctccgc
gacggcttcaacctcctcaccgccgtccgcggcggcgcccagaatctgctcctgctgaac
gtggcgagcacgccgttcggccgcgccatctccgtggtacgggtcctccctcaggtggcc
tccacgggcagctcctcggcgccggaggcgagtggcgcgaaatgcgagctcgagctcatg
tactggcgctacaagggtttcctacgcgagcactgcctgatgtcccgcttcgaggtccca
tccatggatccctcggacgcgctgccagatcccagcgcctccttccagttcttcgtccca
aagagtgttcgtggacacgacgacgctggtcttcacgtcaatgttgttatcgccatcaac
tcatcgtaa

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