Panicum virgatum (switchgrass): 120701887
Help
Entry
120701887 CDS
T07260
Name
(RefSeq) indole-3-glycerol phosphate lyase, chloroplastic-like
KO
K01695
tryptophan synthase alpha chain [EC:
4.2.1.20
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00260
Glycine, serine and threonine metabolism
pvir00400
Phenylalanine, tyrosine and tryptophan biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01230
Biosynthesis of amino acids
Module
pvir_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
120701887
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
120701887
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
120701887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Trp_syntA
Motif
Other DBs
NCBI-GeneID:
120701887
NCBI-ProteinID:
XP_039841628
LinkDB
All DBs
Position
4K:complement(11720612..11721191)
Genome browser
AA seq
141 aa
AA seq
DB search
MAFAVKAASTSQWTLSPAVHQPSSLTTRAAASVAKMPAGRRNAAAAVIRAVAALAPPPAP
APPRPAGKRCLPLSQTMSRLKAQGKTAFIPYITAGDPDLATAAEALRLLDACGADVIELG
LPFSDPDADGPVIQRARSSFA
NT seq
426 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcggtcaaggctgcatcgacctcccagtggactttgtccccggcggttcat
cagccgtcatcgctcacgacgcgggcggcggcgtcggtcgcgaagatgccggcggggcgg
aggaatgctgcggcggccgtcatcagggcggttgccgccttggctccgccgcctgccccg
gcgcctcccaggccagcgggcaagcggtgcctaccgttgtcgcagaccatgtccaggctc
aaggcgcagggcaagacagcgttcatcccgtacatcaccgccggtgaccccgacctagcg
acggcggcggaggcgctgcggctcttggacgcctgcggtgctgacgtcatcgagctcggc
ctgcccttctccgaccccgacgccgacgggcccgtcatccagcgggcgcgctcaagcttt
gcctga
DBGET
integrated database retrieval system
