Panicum virgatum (switchgrass): 120701969
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Entry
120701969 CDS
T07260
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120701969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120701969
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120701969
mRNA degradation factors
5'-3' decay
Decapping complex
120701969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EDC4L
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
120701969
NCBI-ProteinID:
XP_039841692
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All DBs
Position
4K:complement(16698189..16706360)
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AA seq
1086 aa
AA seq
DB search
MAAPSGNPNPAPSAPFELSKLFRPPPNPNHPTTAPTPTGVFPGAPGPATGPPPTGPYSYP
PATPPFHRGPYLHYPNDPHGFHHPAAAAFANANPTANPIPNPGPGPNPGERLMQLLGNTA
PTHLESASSMPPSSEFSAAPAAALPASSSAPPARMPSSKMPRGRLLGPGDRVVHDVDSRL
PGEAEPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLRG
HTQRVTDMAFFAEDVHRLASASVDGRVYVWKIDEGPGEENKSQISGKIETTIQIIGDAET
YHPRICWHSHKQEILYVGIGNCILRIDITKVGRGRDFNTEEPLRCPLDKLFDGVSIVGKH
GGDITDLSISQWMTTRLASASKDGTVKVWDDRRVAPLSVLKPHDGQAVYSVSFVTAPERP
NHINLVTAGPLNREVKIWASTNEEGWLLPSDSETWKCTQTLELVSSLEHRSDDAFFNQVA
VLPQDSLILIANAKKNAIYAVHVEYGQDPASTRLDYIADFTVTMPILSLTGTHDGEQVVQ
VYCVQTMAIQQYGLGLSLCLPPTADNTGSGRDPAISHLNERLPEMAALEPSTATTPVESS
IAVSTKPSNDSQGTEADSPPHVPSAALTSKMNQAGSPVVLSRHPSVGDRDRDADQSPFGR
KDSFGKEELRGVQSDGVVTSAEMVASGTSQNVEAEAKHVDARKSNHTVKLEAGKETHILP
EKKERPVMPSEQTVDAVSERTITDKFSVEDSQPLPGRSVPTLGFYHYPSTTNEGKIIHPQ
VSGQLSPSTSTFNSADSSQEPHINENPPIDPSLQTAAIQGTLQQILLILSLQDVFRSSFE
SSVIPAFEQSCKKIFEQVDGSFQKGMSEHSAAIQQHVLTAHTPLAQTLREAINSASSMNQ
GATSELLDGQRKLLSLFASASPTSQSTGALQPSNGPVTNLPEVDAPLDPMKELGRLIAER
KFDEAFTMALQRSDVSIVSWLCSQVDLQVLCGTVPIPLNQGVLLALFQQLACDIANDTSR
KLQWMTNVAVAIQPTDPIIAMHVRPIFEQVYGVLAHQRSLPTTNASDATKISLIMHVITS
VLMSHK
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccgtcggggaatcctaaccccgcccccagcgcccccttcgagctcagcaag
ctcttccggcccccgccaaaccctaaccaccccaccaccgccccgacccccaccggcgtc
ttcccgggcgcgcctggccccgctaccgggccaccgcccacagggccctactcctacccg
ccggccaccccgcccttccaccgcggcccctacctccactatcccaacgacccccacggc
ttccaccaccccgccgcggccgccttcgccaacgctaaccccaccgcaaaccctatcccg
aacccaggcccgggcccgaacccgggggagcggctcatgcagcttctcggcaacaccgcg
cccacccacctggagtcggcgtcgtccatgccgccctcgtcagagttctccgcggcccct
gcggcggcgcttccggcgtcatcgtccgcgccaccggcgaggatgcccagcagcaagatg
ccgcgcgggaggctgctggggcccggggaccgagtggtgcacgacgtggactcgcggttg
ccaggggaggcagagccgccacagctggaggtgacgcccataaccaagtacacctcggac
cccgggctggtcctcggcaggcagatcgccgtgaacaggacgtacatcgtgtacggtctt
aagctaggcaacatccgtgtgctcaacattaacactgcactccgctccctccttcggggg
cacacacagagggtgacggacatggccttttttgcagaagatgtccatcgtctagcaagt
gcaagtgtagatgggcgggtatatgtttggaagattgatgagggacctggtgaggaaaat
aaatctcaaatttcaggaaagattgaaaccaccatccagattataggagatgctgaaacc
tatcatccgagaatatgttggcactctcataagcaagagattctgtatgttggaattggg
aattgcatcttaagaatagacataacaaaagtgggaagaggaagagacttcaatacggaa
gagcctctaagatgcccacttgacaagctctttgatggtgtgagcatagttggtaaacat
ggtggagacattactgatctctccatatctcaatggatgactacacgtctggcttcagca
tcaaaagatggcacggtaaaggtctgggatgatcgcagggtagcccctctgtctgtgctg
aaaccacatgatggtcaagctgtttactcagtttcttttgttacagcacctgaacgacca
aatcatataaatcttgttacagcaggcccactcaaccgagaagtaaaaatttgggcctcc
actaatgaagaaggctggttgttgccaagtgactcggaaacatggaaatgcactcaaacg
ttggaacttgtaagttctctggaacataggtctgatgacgcatttttcaaccaagttgca
gtgttgccacaggatagccttatattgattgcaaatgccaaaaagaatgctatttatgct
gtgcatgttgagtatggtcaagatcccgcctcaactcggttggactacatagcagatttt
actgttactatgcccattttgagtctcacgggaactcatgatggtgaacaagttgttcaa
gtttattgtgtccagacaatggctatccagcagtatgggttggggttatcgctctgtctt
cctcctacagctgataacactggatctggaagagacccagctatttctcatttaaacgag
aggcttccagaaatggcagcactggagccttccacagcaactactcccgttgaatcttct
attgctgtttcaactaagccatcaaatgacagtcagggcacagaagctgattctcctccc
catgttccatctgcagctcttacatcaaagatgaatcaggctggatctccagttgtctta
agtagacatccttcagtgggtgatcgcgatcgtgatgcggaccaatcaccttttgggaga
aaggatagcttcggaaaggaagagctgagaggcgtccagagtgatggtgtggtcacttct
gcagaaatggttgcaagtggcacctcacagaatgtggaagcagaggcaaaacatgtagat
gcgagaaaatcaaatcatactgttaaacttgaggctggtaaggagacccatattcttcct
gagaaaaaagagagacctgtcatgccttcagagcaaactgtagatgctgtcagtgaacgc
acaataactgacaagttcagtgtagaagattcacagcctctgcctggtagatcagtacca
actcttggattttaccattacccctcaactaccaatgaggggaaaatcatacatcctcaa
gtatctgggcaactatctccttctacaagcacattcaactctgctgattcctcgcaagaa
cctcatatcaatgagaaccctcctattgatccctccctgcaaactgcagctattcaagga
acactgcaacagatccttttgattttatccctgcaggatgtgttccgctctagctttgag
tcgtcagttattccagcgtttgaacaatcatgcaagaaaatatttgagcaagtagatggt
tcatttcagaaaggcatgtccgagcacagtgctgctatccagcagcacgtcctgacagca
catactccattagcacaaactctaagggaagcaatcaattcagcatcgtcaatgaaccag
ggtgctacatcagaattacttgatggccagcgcaagcttttgtcactatttgcatcagcg
agcccaacatcacagagcacaggtgctttgcagcccagtaacggaccagtgacgaatctc
cctgaggttgatgctccattggatcctatgaaagaactaggtcgactgattgcggagcgg
aaatttgatgaggcatttacaatggctcttcaaagaagcgatgtctctatagtttcttgg
ttgtgttctcaggttgatttgcaagtattgtgtgggacagtacccatccctctgaaccaa
ggggttctcctagcccttttccagcagctagcgtgtgacattgccaacgacacgtcccgg
aagcttcaatggatgacaaatgttgctgtggcaatacaaccaacagatccgataatcgct
atgcatgtaaggccaatattcgaacaagtctatggtgtcctggcacaccagcggtcgctg
ccaacaaccaatgcatctgatgcaacaaaaatcagcttaatcatgcatgtgatcacctca
gtgctgatgagccacaagtga
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