Panicum virgatum (switchgrass): 120702020
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Entry
120702020 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120702020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120702020
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120702020
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Step II factors
120702020
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
UBA_5
DUF5669
Motif
Other DBs
NCBI-GeneID:
120702020
NCBI-ProteinID:
XP_039841732
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All DBs
Position
4K:22719797..22720714
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AA seq
305 aa
AA seq
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MAPTTTPEIQRANLGWTVLNMKAMGINDLLTFNFMDPPASQALVSAMEQLYSLGALDEEG
LLTRLGRKMAEFPQEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPRQAQADPKRS
NFFQPEGDHLTLLTVYEAWKAKGFSGPWCFENFVQINSLRRAQDVRKQLLEIMDKYKLDV
ASAGNNHTKIGKALAAGFFFHAARKDPSGGYRTLADHQHVYIHPSSALFHQQPRWVIYHE
IVMTTKEYMREVTAVDPRWLVELAPRFYRSVDPTRITKRKRQERIEPLYDRHSEPNSWRL
SKRRW
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcccccacaacaactccagagatccagagggccaacttggggtggactgttcttaat
atgaaggcaatgggaattaatgacctgttgacatttaacttcatggacccaccagcatct
caagcacttgtgtcagctatggaacaattgtacagtcttggtgccttagatgaagagggc
cttcttaccaggctagggagaaagatggctgaatttccacaagagccacctctttcaaag
atgctccttgctagtgtagaccttggatgcagcgatgaaatactgacgatcattgcaatg
attcaaactggaaacatattctatcggccaagacaagctcaagcagatccgaagagatca
aactttttccagccagaaggtgatcatctcacccttctcactgtgtatgaggcatggaag
gcaaaaggattttcaggaccatggtgctttgagaattttgtccagataaactcattaaga
agggcacaggatgtgcggaaacaacttcttgagatcatggataagtataagcttgatgtt
gcctcagctgggaacaatcacaccaagatagggaaagcccttgccgctggattcttcttc
catgctgcaaggaaggatcccagtggaggataccggacccttgctgatcatcagcatgtg
tatatccacccaagcagtgccctctttcatcagcagcctcggtgggtaatctaccatgaa
atcgtcatgacgacaaaggagtacatgagggaagtcacagccgttgacccaagatggcta
gtagagttggcaccaaggttctacagatcggtggacccgacaaggatcactaagcggaag
cgccaagagaggatcgaacccctgtatgatagacacagtgaaccgaactcgtggcgttta
agcaagcgccgttggtaa
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