Panicum virgatum (switchgrass): 120702037
Help
Entry
120702037 CDS
T07260
Name
(RefSeq) transcriptional activator hap3-like
KO
K08065
nuclear transcription Y subunit beta
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120702037
Transcription factors [BR:
pvir03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Heteromeric CCAAT factors
120702037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
120702037
NCBI-ProteinID:
XP_039841747
LinkDB
All DBs
Position
4K:25581788..25582987
Genome browser
AA seq
195 aa
AA seq
DB search
MDKNQANNLREGARGTDHAPEEHRIPRATVARIMRHGSPPNSTITGDAKEAVDNCLVEFC
AVLIAAAVEECRQDKRTTVTGDDLILALANLGFEDYVRPLALYLRRYREIEGNRPRARHS
SMAAAQGPTAPAEVEALPPPSPEPTLQLEPPPSVRDVTELGLHGDVYAVWRAAAAAAAGT
MQAPAGAGDDDEDEE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaaatcaagctaacaatctccgagagggtgcacgaggcaccgatcatgcacct
gaagagcacaggattccaagagccaccgtggcacgaatcatgcgccacggctcgccgccg
aactcaacgatcaccggcgacgccaaggaggccgtggacaactgtctcgtggagttctgc
gcggtcttgatcgctgcagccgtggaggagtgcaggcaggacaagcgcacgaccgtgacc
ggcgacgacctaatcctcgccttggccaacctcggattcgaggactacgtcaggcccctg
gctctgtacctccgccgctaccgcgagatcgagggcaacaggccacgcgcccggcacagc
tccatggcagcggcgcagggcccgacggccccggcagaggtggaggcgctgccgccgccg
tcgccggagccaaccctgcagctggagccgccgccgtcggtgcgtgacgtcacggagctg
ggcctgcacggcgacgtgtacgctgtgtggcgtgctgctgcagcggccgccgcaggaacg
atgcaggcgccagctggtgctggtgatgatgatgaggacgaggagtga
DBGET
integrated database retrieval system
