KEGG   Panicum virgatum (switchgrass): 120702046
Entry
120702046         CDS       T07260                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
  KO
K14962  COMPASS component SWD2
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120702046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120702046
   03036 Chromosome and associated proteins [BR:pvir03036]
    120702046
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     120702046
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     120702046
    COMPASS/SET1 complex (yeast)
     120702046
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR75_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_SPT8 WDR55 NBCH_WD40 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_IFT122_1st WD_LRWD1 Methyltransf_13 Beta-prop_WDR19_1st Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 120702046
NCBI-ProteinID: XP_039841754
LinkDB
Position
4K:26347694..26348974
AA seq 162 aa
MAAALSQLDDEIVHGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLHVNVCQVGYQSSANLSSQ
NT seq 489 nt   +upstreamnt  +downstreamnt
atggcggcggcgttatcgcagctggacgacgagatcgtccacggcatggccatcggcgcg
gtcttcactgattacgccgggaagataaactgcctcgacttccaccgcaaggaggatctc
ctcgtcacctccagcgaggacgactccatacgactctacaacatcaccagcgcgacgttg
ctaaagactacatatcataggaaacatggtgctgaccgtgtctgttttactcatcatccg
agttctatcttatgctcatcaagatacaatctagagtctgcagagtcactccgttatctg
tcattgtatgacaaccgttgcttaagatacttcaaagggcacaaagacagggttgtctca
ttatgtatgtcacctgtcaatgatagctttatgtcaggatcacttgatcacagtgtcaga
atatgggatcttcatgttaatgtttgtcaggttggctaccaatcttcagcaaacttgagc
tcacaatag

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