Panicum virgatum (switchgrass): 120702310
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Entry
120702310 CDS
T07260
Name
(RefSeq) U-box domain-containing protein 12-like
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120702310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120702310
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120702310
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
U-box type E3
120702310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-RING_UBOX
ARMC9_ARM
zf-C3HC4_4
Arm_2
ARM_LIN_C
zf-Nse
Cnd1
HEAT_EZ
zf-C3HC4_2
zf-C3HC4
V-ATPase_H_N
zf-RING_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
120702310
NCBI-ProteinID:
XP_039841969
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All DBs
Position
4K:167897..180089
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AA seq
599 aa
AA seq
DB search
MPARVAAEIAALPEPRGPMRRLCGDLARRIRLLAPLLQQLQGALPLADALGAARDLLRAV
HDGSKIYQAMRGDGLLDRFASVNRQIQLALDALPYHTFDMPEEVQEQVALVHSQFKRAAT
RTDPPDVQLSKDISSALADKTFDPLVFTRISEKLQLQTMADIKKESVALHEMVISSGGEP
DGCVEEMSSLLKKLKDCVITEKAPTPETLTARSASIKHTSPIIPDEFRCPISLELMQDPV
IVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLIAQWCEANGIELPKN
KANSRDRKSAKSSDYDHAGLVSLMTRLRGGNQYEQRAAAGEIRLLAKRNVNNRICIAEAG
AIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVASHAIPKIVEVLKTGSMEAREN
AAATLFSLSVVDENKVTIGGAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKIRVV
KAGIVIHLMNFLVDPTGGMTDEALTLLAILAGNPEARAVIAQSDPIPPLVEVIKTGSPRN
RENAAAILWSLCCADVEQTRAAKAAGAEDALKELLESGTDRAKRKSSSILELMRQAEEA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgcgtgtggcggcggagatcgccgcgctcccggagccgcgcgggcccatgcgc
cgcctctgcggcgacctcgcgcgccgcatccgcctcctcgcgcccctcctccagcagctc
cagggcgccttgcctctcgccgacgcactcggggcagcgcgcgacctcctccgcgcagtt
cacgacggcagcaagatctaccaggcgatgcggggggatggcctgctcgaccgcttcgca
agcgtcaacaggcagattcagctggccctggatgccttgccttaccacaccttcgacatg
cctgaagaagtgcaggagcaggtcgcgcttgtgcattctcagttcaaaagggctgccacc
agaacggatccaccagacgtgcagctttcaaaggatatatcctccgccctcgctgacaag
acctttgaccctctggttttcacaaggatctcagagaagctgcaattgcagaccatggcc
gatatcaagaaagaatccgtcgccctgcacgagatggtcatctccagtggcggcgaacct
gatggctgcgtcgaggagatgtcttccttgctcaagaagctcaaagactgtgtcatcact
gaaaaagctcccacaccagagacactcaccgccaggtctgcctccataaagcacacatct
ccaatcatccccgatgaattcagatgcccgatatcccttgagctcatgcaagaccctgtc
atcgtctccagcggacagacatacgagcgatcatgcatccagaaatggcttgattctgga
cataagacatgccctaagacgcagcagcctctctcacatacctcactgacaccaaacttc
gtcctcaaaagcctaatagctcagtggtgtgaagccaacggcattgagcttccaaagaac
aaggcaaattccagagataggaaatcagcaaaaagctctgactatgaccatgctggtcta
gtctcactaatgaccaggctgaggggtgggaaccaatatgagcagcgggctgctgctggt
gagatccgtttgcttgcaaagagaaatgtcaacaaccggatatgcattgccgaagcagga
gcaattcccttgcttgtcaatctactctcctcttcggatccaagaacgcaggaacatgct
gtcactgcgctccttaacctctccatccatgagaacaacaaggcaagcattgtggcctct
catgctatccctaagattgtggaagtgcttaaaactgggagcatggaagccagagagaac
gcagccgctacactattcagcttgtcagttgttgatgaaaacaaggttacaattggtggt
gctggtgcaatacctccactcattaatcttctgtgcgatgggagcccaagaggcaagaaa
gatgcagcaacagcaatttttaatctgtgcatatatcagggaaataagatccgagtagtc
aaagctggaattgtcatccatctgatgaacttcttggtggatcctactgggggaatgact
gatgaggcactcactcttctggctatccttgctggtaaccctgaagccagggctgtaatt
gcgcagtcagatccaatccccccacttgtagaggtaattaaaacagggtctcctcgcaac
agagagaacgctgcagccattctgtggtcgctttgttgtgctgatgttgagcaaacgagg
gctgcaaaagctgctggagcggaggatgcactcaaggaactgttggagtctggcacggac
cgtgcaaagagaaaatcttctagcattctggaactcatgcggcaagctgaagaagcatga
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