Panicum virgatum (switchgrass): 120702330
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Entry
120702330 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120702330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120702330
03041 Spliceosome [BR:
pvir03041
]
120702330
03009 Ribosome biogenesis [BR:
pvir03009
]
120702330
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120702330
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120702330
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120702330
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120702330
Complex C
U4/U6.U5 tri-SnRNP related factors
120702330
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120702330
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120702330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
120702330
NCBI-ProteinID:
XP_039842011
LinkDB
All DBs
Position
4K:375967..384186
Genome browser
AA seq
999 aa
AA seq
DB search
METLKRKAPDGPAPADNASPLKAPRADAAEPPARTTLAAAEPIACVHDVSYPEGYDAAAS
ASRVLAGGAEGYEPAKKFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMS
LRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIVPNASCLVMTTEIWRSMQYK
GSEIMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAK
VHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKGRFREDSFQKALNALVPATGGDK
KKENGKWQKGIVAGKSSEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLN
EDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQ
EGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQR
GICILMVDEKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRFSFYQF
QADRALPDLEKQIKELESDRNSMVIEEEESLKDYYDLLQQYKSLKKDVRDIVLSPKHVLP
FLQPGRLVRILYSTYESATFSIDENVTWGIIINFEKVKSNGEDRRPEDSDYTVDVLTRCS
VSKDSSGKKTMKIIPLKECGEPVVISLPLSQIDGLSSIRMYIPKDLLPVEARENTLRKVE
EVLSRFAKDGVPLLDPEEDMKVQSKSFRKATRRIEALEGLFEKHDIRGSPHIQQKLKVLH
AKQELSAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVEVKGKVACEISSA
DELTLTELMFSGILKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVA
NLQLECKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEMTQVFEGSLIRAIRRLEEV
LQQLILASKSIGETELEAKLEEAVSKIKRDIVFAASLYL
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctcaagcgcaaggccccggacggacctgcgcctgccgacaacgcctcccct
ctcaaagcgccgcgcgcggacgccgcggagcctcccgcccgcacaaccctcgccgccgcg
gagcccatcgcctgcgtgcacgacgtctcctacccagaaggctacgacgcggctgcctct
gcctcccgcgtgctcgccggcggtgctgagggctatgagcccgccaagaagttccccttc
cagctcgacccgttccaggccgaggccatacgctgcctcgacaatggcgagtcagtcatg
gtttcagctcatacatcagctggaaagacagtggtcgccttgtatgcaatagcaatgtct
ctgcgcaaccaacagcgtgtcatctatacatctccaatcaaggcattgagcaaccaaaaa
tacagagagttcaaagaagagttctctgatgttggtctcatgactggggatgtcacaatc
gtgccgaatgcctcctgcctggtcatgaccacggaaatttggcggagcatgcagtacaaa
ggatctgagatcatgagggaagttgcttgggttatatttgatgaggtgcattacatgcgg
gatagagagagaggagtggtgtgggaggagagtatagtgatggctcccaagaactcacgt
ttcgtgttcctctcagctactgtacctaatgccaaggagtttgctgattgggtagctaag
gtacataaacaaccttgccatatagtatacaccgactaccgacccacacccctccaacac
tatgtatttccttcaggaggggatggattatatctggtagtggatgagaagggcaggttc
agagaggacagtttccagaaagcattgaatgcgcttgtccctgcaactggtggtgacaag
aagaaggaaaatgggaagtggcagaaaggtatcgtggcaggcaaatctagtgaggaaagt
gacatattcaagatggttaaaatgataattcagcgtcaatacgatcctgtgatacttttc
agctttagcaaaagggaatgtgaatttcttgctatgcagatggctaagatggacttgaat
gaggatgatgagaaggcaaacatcgaaacaattttttggagtgctatggatttgctttct
gatgatgacaaaaagcttcctcaggtttcaaacatgctacccttactgaaacgcggtatc
ggcgtgcatcattctggtctgttgcccatcttgaaggaagtgattgagattctcttccag
gagggcctcatcaagtgtttgtttgccacagaaacattcagtattgggctgaacatgcct
gcaaagactgttgtgtttaccaatgtgcgaaaatttgatggagaccgattcagatggttg
tcgagtggtgagtacatccagatgagtggccgtgctggtcgtcgaggtattgatcagcgt
ggtatatgtatcctgatggtagatgagaaaatggagccttcaactgccaaaatgatgctg
aaaggaagtgctgatagtttgaacagtgcctttcatctgagctacaatatgctgttaaat
caaatgagatctgaggatggagatccagaaaagcttcttcggttttcattttaccaattc
caggctgatcgagctctccctgatcttgagaagcaaatcaaggaactggaatcagatagg
aattccatggtcattgaggaagaggagagcttgaaggattactatgatctcttacagcag
tacaaaagtttgaagaaggatgtccgtgatattgtcctatctccaaaacatgtcctacct
ttcttgcaacctggaaggcttgtccgtattctatatagtacatatgagtcagccaccttc
tccattgatgaaaatgtcacatggggaattattataaactttgaaaaagtgaaatccaat
ggtgaagatagaaggcctgaagattctgattatacagttgatgtccttaccagatgttct
gtaagtaaggatagcagtggaaagaaaacaatgaagattattcctctgaaagaatgtgga
gaaccagttgttatttcactgccactttcacagattgatggactaagcagcattcggatg
tacatacctaaggatcttctgcctgtagaagctcgagaaaacaccttgaggaaagttgaa
gaagtgctgtcaaggtttgctaaagatggggtacctttattggatccagaagaggatatg
aaggtacaatcaaaatcttttcggaaagctaccagaagaatagaagctctggagggctta
tttgagaagcatgatatccgtggttctccgcatatccagcaaaaacttaaagtcttgcat
gctaagcaagaattatcagctaaaataaagtccatcaagaaaacaatgcggtcttccact
gctttagctttcaaggacgagctcaaggcccggaaacgggttcttcgcaggctgggatat
gttacaagcgatgatgttgtggaagtgaagggcaaggtggcctgtgaaataagctcagct
gatgagctaacattgacagagcttatgtttagtggcattttgaaggatgctaccgtagaa
cagatggtggccctgctttcttgctttgtttggcaggagaagctccaggatgccccaaag
ccaagggaggagcttgatttgctcttttaccaattgcaggagacagcgagaagggttgct
aaccttcagcttgagtgcaagatccaaattgatgtggaaagctttgtgaattctttccga
cctgacataatggaagcggtgtattcatgggccaaagggtcgaaattctaccaaatcatg
gagatgacccaagtgttcgaaggcagcttgatcagggccatcaggaggctagaggaggtt
ctacagcagctaattctggcatccaagtcgattggggaaaccgaattggaagcaaaactt
gaggaggcagtcagcaagatcaaaagggatatagtattcgctgcatctttgtatttgtaa
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