Panicum virgatum (switchgrass): 120702394
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Entry
120702394 CDS
T07260
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120702394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120702394
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120702394
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120702394
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120702394
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
120702394
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
120702394
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP60 / Chaperonin
120702394
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
120702394
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120702394
Exosomal proteins of other body fluids (saliva and urine)
120702394
Exosomal proteins of breast cancer cells
120702394
Exosomal proteins of colorectal cancer cells
120702394
Exosomal proteins of bladder cancer cells
120702394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
120702394
NCBI-ProteinID:
XP_039842117
LinkDB
All DBs
Position
4K:complement(1048809..1053541)
Genome browser
AA seq
579 aa
AA seq
DB search
MASTFGATSTVGLMATPTGKNVRLQRRANFRVKAAKELYFNKDGSAIKKLQTGVNKLADL
VGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAG
DGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELRKLSKEVEDSELADV
AAVSAGNNYEIGNMIAEAMNKVGRKGVVTLEEGRSSENFLYVVEGMQFERGYISPYFVTD
SEKMTAEYENCKLLLVDKKITNARDLINVLEEAIRGGYPILIIAEDIEQEALATLVVNKL
RGSLKIAAIKAPGFGERKTQYLDDIAILTGGTVIRDEVGLSLDKADKSVLGTAAKVVLTK
EATTIVGDGSTQEEVTKRVAQIKNLIEAADQEYEKEKLNERIAKLAGGVAVIQVGAQTET
ELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRR
ALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKYGYNAATGQYEDLMAAGIIDPTKVVRCCL
EHAASVAKTFLMSDVVVVEIKEPEPAPLTNPMDNSGYGY
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacattcggtgccacttctacggttggccttatggctactccaacaggtaag
aatgtgcgccttcagaggagggctaacttcagagtaaaagcagctaaggagctgtacttc
aacaaggatggctcagctatcaagaagctccagactggagttaacaagcttgcagaccta
gttggagttacactgggaccaaagggaaggaatgtggttctggagagcaagtatgggtct
cctaagattgttaacgatggtgttacagttgcaagagaggttgagctggaggatccggtt
gaaaacattggagctaaattggttaggcaagctgcagctaagaccaatgatctagctgga
gatgggacaactacttctgtggtccttgctcaggggctgatagctgagggtgttaaggtt
gtggcagctggtgctaatcctgttcagattacccgtggtattgagaaaacagcgaaagca
ctagttgaggaactacgaaagctttcaaaggaagttgaagacagcgagcttgcagatgtt
gcagcagtaagtgctggcaacaactatgaaattggaaacatgatagcagaggccatgaac
aaggttggtcggaagggtgtggttacccttgaagaggggagaagttctgagaactttcta
tatgttgtggagggaatgcaatttgagcgtggttacatctctccttacttcgtaactgac
agtgagaaaatgaccgccgagtatgagaactgcaagctgcttttggtggacaaaaagatc
accaacgcaagggatcttatcaacgttttggaggaagccatcagaggtggatacccaatc
ctgataattgctgaggatattgagcaggaggctcttgctacccttgttgtcaacaagctt
agaggatcattgaagattgctgctatcaaagcccctggttttggagagcgcaagacccag
tacttggatgatattgccatccttactggaggaactgtaatcagagatgaagtcgggctc
tcacttgacaaggcggataaatcagtccttggaacagctgcaaaggtcgtccttaccaaa
gaggcaacaacaatagtaggtgacggcagcacacaggaagaagttactaagagggttgca
caaattaaaaatctcattgaggcagcagatcaagaatatgaaaaggaaaaactcaatgag
aggatagcaaagcttgctggtggtgttgctgtcattcaggtgggggcacaaacagaaact
gaactaaaagagaagaagttgagagttgaggatgccctaaacgcaactaaggctgctgtt
gaggaaggtattgttgttggtggagggtgcactctcttgcggcttgccgctaaagttgat
gccatcaaggacacactggagaatgatgagcagaaggttggagctgaaattgtgaggagg
gctctgagctacccactcaaattgattgctaaaaatgctggtgttaatggaagcgttgtc
actgaaaaggttctttctaacgataatttcaagtatggttacaatgccgctaccggacag
tacgaggacttgatggctgctggtatcattgaccccaccaaggtggtgaggtgctgcttg
gagcacgctgcatcggtggccaagaccttcctcatgtcggacgtcgtggttgtcgagatc
aaggagcctgagcctgctcccctcactaaccccatggacaactctggctatgggtactga
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